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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF144
Library SL
(Link to library)
Clone ID SLF144
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09670-1
Original site URL
Representative seq. ID SLF144E
(Link to Original site)
Representative DNA sequence 
>SLF144 (SLF144Q) /CSM/SL/SLF1-B/SLF144Q.Seq.d/
AGGCATTAGTCATGTCATTAATTTCTCTTTACCTTCTGATTGTGAAACTTATGTACATCG
TATTGGTCGTACCGGTAGAGCAGGTGCCCTCGGTACATCTCATTCAATTCTCTCAAATAA
CTCTTTAGATGATATGGAATTGGTTGGTGATTTAACTAATCTCTTACAAAGATCCGAACA
AGAGGTTCCTTCTGAATTTTTAGATATTAACGCAATTAGAAATAGACAAAATATGAAAGG
TGGAAATGGTGGTGGTAGAAATGGTGGTGGTGGTAGAAATGGTGGTGGTAGAAATGGTGG
TGGTAATAGAGGCGGTAATAGAGGTGGAAATTATGGTGGTCGTAGATATTAAAAATTTTA
AATAATAAAAATTAAAAAAAAAAAAAAAAA
sequence update 1998. 9.11
Translated Amino Acid sequence 
GISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRSEQ
EVPSEFLDINAIRNRQNMKGGNGGGRNGGGGRNGGGRNGGGNRGGNRGGNYGGRRY*kf*
iikikkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rh*sch*flftf*l*nlctsywsyr*srcpryisfnslk*lfr*ygigw*fn*sltkirt
rgsf*ifry*rn*k*tkyerwkwww*kwwww*kwww*kwww**rr**rwklwws*ilkil
nnkn*kkkkk


Frame B:
GISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRSEQ
EVPSEFLDINAIRNRQNMKGGNGGGRNGGGGRNGGGRNGGGNRGGNRGGNYGGRRY*kf*
iikikkkkk


Frame C:
alvmslislyllivklmyivlvvpveqvpsvhliqfsqitl*miwnwlvi*lisykdpnk
rfllnf*iltqleidki*kvemvvvemvvvvemvvvemvvvieavieveimvvvdiknfk
**klkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ202 (VFJ202Q) /CSM/VF/VFJ2-A/VFJ202Q.Seq.d/                        472   e-132
SLF144 (SLF144Q) /CSM/SL/SLF1-B/SLF144Q.Seq.d/                        472   e-132
VSH141 (VSH141Q) /CSM/VS/VSH1-B/VSH141Q.Seq.d/                        137   1e-31
VSI782 (VSI782Q) /CSM/VS/VSI7-D/VSI782Q.Seq.d/                         40   0.024
VSF717 (VSF717Q) /CSM/VS/VSF7-A/VSF717Q.Seq.d/                         40   0.024
SSF370 (SSF370Q) /CSM/SS/SSF3-C/SSF370Q.Seq.d/                         40   0.024
SHD485 (SHD485Q) /CSM/SH/SHD4-D/SHD485Q.Seq.d/                         40   0.024
SHC415 (SHC415Q) /CSM/SH/SHC4-A/SHC415Q.Seq.d/                         40   0.024
SHB438 (SHB438Q) /CSM/SH/SHB4-B/SHB438Q.Seq.d/                         40   0.024
SFJ775 (SFJ775Q) /CSM/SF/SFJ7-D/SFJ775Q.Seq.d/                         40   0.024
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052813) Dictyostelium discoideum slug cDNA, clone SLF144.      472   e-129  1
(BJ432546) Dictyostelium discoideum cDNA clone:ddv19c02, 3' ...   472   e-129  1
(ED814257) ML__Ba0091F16r ML__Ba Mimulus lewisii genomic, ge...    56   0.001  1
(CP000885) Clostridium phytofermentans ISDg, complete genome.      56   0.001  1
(CP000815) Paulinella chromatophora chromatophore, complete ...    54   0.004  1
(DV987840) GQ02011.B7_L02 GQ020: Clean ROOTS systems -Diurna...    54   0.004  1
(DV986084) GQ0205.B3_L21 GQ020: Clean ROOTS systems -Diurnal...    54   0.004  1
(DV984732) GQ0204.TB_N12 GQ020: Clean ROOTS systems -Diurnal...    54   0.004  1
(DR492185) WS02919.CR_J19 SS-IB-A-FL-15 Picea sitchensis cDN...    54   0.004  1
(DR464599) WS00933.B21_C18 IS-B-N-A-10 Picea engelmannii x P...    54   0.004  1
dna update 2009. 5. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A5DS77) RecName: Full=ATP-dependent RNA helicase DBP2;         ...    67   2e-10
BC121888_1(BC121888|pid:none) Xenopus tropicalis DEAD (Asp-Glu-A...    67   2e-10
(Q62095) RecName: Full=ATP-dependent RNA helicase DDX3Y;        ...    67   2e-10
(Q5RF43) RecName: Full=ATP-dependent RNA helicase DDX3Y;        ...    67   3e-10
(Q9VHP0) RecName: Full=ATP-dependent RNA helicase bel;          ...    67   3e-10
AC006665_5(AC006665|pid:none) Caenorhabditis elegans fosmid H27M...    67   3e-10
AK302172_1(AK302172|pid:none) Homo sapiens cDNA FLJ50912 complet...    67   3e-10
AF000984_1(AF000984|pid:none) Homo sapiens dead box, Y isoform (...    67   3e-10
AY089613_1(AY089613|pid:none) Drosophila melanogaster RE28061 fu...    67   3e-10
BC172016_1(BC172016|pid:none) Mus musculus DEAD/H (Asp-Glu-Ala-A...    66   3e-10
protein update 2009. 7. 5
PSORT 

 psg: 0.84  gvh: 0.46  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLF144 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLF144E
Full length Seq. 
>SLF144E.Seq
AGGCATTAGTCATGTCATTAATTTCTCTTTACCTTCTGATTGTGAAACTTATGTACATCG
TATTGGTCGTACCGGTAGAGCAGGTGCCCTCGGTACATCTCATTCAATTCTCTCAAATAA
CTCTTTAGATGATATGGAATTGGTTGGTGATTTAACTAATCTCTTACAAAGATCCGAACA
AGAGGTTCCTTCTGAATTTTTAGATATTAACGCAATTAGAAATAGACAAAATATGAAAGG
TGGAAATGGTGGTGGTAGAAATGGTGGTGGTGGTAGAAATGGTGGTGGTAGAAATGGTGG
TGGTAATAGAGGCGGTAATAGAGGTGGAAATTATGGTGGTCGTAGATATTAAAAATTTTA
AATAATAAAAATTAAAAAAAAAAAAAAAAA
Length of full length seq. 390