SLF140
Library SL
(Link to library)
Clone ID SLF140
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16365-1
Original site URL
Representative seq. ID SLF140Z
(Link to Original site)
Representative DNA sequence
>SLF140 (SLF140Q) /CSM/SL/SLF1-B/SLF140Q.Seq.d/
XXXXXXXXXXGGTGGTGTTGCTGGTTCAATCGCTAATGCCGCTTCATCAATTGCCTCTGT
TGCAAATTCAGTCTCATCAATGACCAATTCAGTTTCATCATTAGCTAAACTCAGTTTCAT
CATTAGCTGGTTCATCATCATCATCAGGTTCATCAGGTTCATCATCATCATCATCATCAT
CAGGTTCATCAGGTGGTTCATCAGGTGGTTCATCAGGTGGCGGTGGTGGTTCAGGTGAAT
TATTATCACAAAACCAAGTTTTCGCTACTTGTGTTAGAGTTATTTCAACCAATGTTGGAC
CAAATGTTGATATTGAAGATAAAATTGGTAAACCAATTATGGATGCATCAACAAAAGTTT
GCGAGGATCTCTTTGGATCACCATATTGTCAATGGACCGATAACCATATTGTTACTGCTG
TTTCAAGCAAATTAGATGATGGTTTCCCAACTCAAGGTGCATTCAATGTTACTCGTTCTC
AATACGGTTACATCATGGAAAATGGCCATTATTTAAATAATAAAGGAAACTCTGTTAGAA
TTAATTAAATAAATAATATATTAAACTAAGAATATAAAAAAAAAAAAAATAA
sequence update 1999. 7.15
Translated Amino Acid sequence
---vvllvqslmplhqlpllqiqshq*piqfhh*LNSVSSLAGSSSSSGSSGSSSSSSSS
GSSGGSSGGSSGGGGGSGELLSQNQVFATCVRVISTNVGPNVDIEDKIGKPIMDASTKVC
EDLFGSPYCQWTDNHIVTAVSSKLDDGFPTQGAFNVTRSQYGYIMENGHYLNNKGNSVRI
N*inniln*eykkkkn


Translated Amino Acid sequence (All Frames)
Frame A:
---vvllvqslmplhqlpllqiqshq*piqfhh*LNSVSSLAGSSSSSGSSGSSSSSSSS
GSSGGSSGGSSGGGGGSGELLSQNQVFATCVRVISTNVGPNVDIEDKIGKPIMDASTKVC
EDLFGSPYCQWTDNHIVTAVSSKLDDGFPTQGAFNVTRSQYGYIMENGHYLNNKGNSVRI
N*inniln*eykkkkn


Frame B:
---wccwfnr*crfinclcckfslindqfsfiis*tqfhh*lvhhhhqvhqvhhhhhhhq
vhqvvhqvvhqvavvvqvnyyhktkfsllvlelfqpmldqmlilkiklvnqlwmhqqkfa
risldhhivngpitillllfqan*mmvsqlkvhsmllvlntvtswkmaii*iiketllel
ik*iiy*tknikkkki


Frame C:
---gvagsianaassiasvansvssmtnsvsslaklsfiiswfiiiirfirfiiiiiiir
firwfirwfirwrwwfr*iiitkpsfrylc*syfnqcwtkc*y*r*nw*tnygcinkslr
gslwitilsmdr*pycyccfkqir*wfpnsrciqcysfsirlhhgkwplfk**rklc*n*
lnk*yiklri*kkkk*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL554 (VFL554Q) /CSM/VF/VFL5-C/VFL554Q.Seq.d/ 589 e-167
SLF140 (SLF140Q) /CSM/SL/SLF1-B/SLF140Q.Seq.d/ 589 e-167
SLC240 (SLC240Q) /CSM/SL/SLC2-B/SLC240Q.Seq.d/ 589 e-167
SLC232 (SLC232Q) /CSM/SL/SLC2-B/SLC232Q.Seq.d/ 589 e-167
SLA329 (SLA329Q) /CSM/SL/SLA3-B/SLA329Q.Seq.d/ 573 e-162
CHA351 (CHA351Q) /CSM/CH/CHA3-C/CHA351Q.Seq.d/ 567 e-161
SFC859 (SFC859Q) /CSM/SF/SFC8-C/SFC859Q.Seq.d/ 561 e-159
VHQ412 (VHQ412Q) /CSM/VH/VHQ4-A/VHQ412Q.Seq.d/ 527 e-149
SLG763 (SLG763Q) /CSM/SL/SLG7-C/SLG763Q.Seq.d/ 434 e-121
FC-AB29 (FC-AB29Q) /CSM/FC/FC-AB/FC-AB29Q.Seq.d/ 430 e-119

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X83390|X83390.1 Albinaria coerulea complete mithochondria DNA. 52 0.008 1
AC021452|AC021452.2 Homo sapiens chromosome 11 clone RP11-103C15 map 11, LOW-PASS SEQUENCE SAMPLING. 48 0.12 1
AC103856|AC103856.1 Homo sapiens chromosome 15 clone RP11-203L21 map 15, LOW-PASS SEQUENCE SAMPLING. 48 0.12 2
AC023068|AC023068.3 Homo sapiens clone RP11-94P11, WORKING DRAFT SEQUENCE, 10 unordered pieces. 48 0.12 1
AP003181|AP003181.2 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-94P11. 48 0.12 1
AC091602|AC091602.6 Homo sapiens BAC clone RP11-655M19 from 4, complete sequence. 46 0.33 2
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 46 0.47 1
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 0.47 1
AC132876|AC132876.1 Homo sapiens chromosome 17 clone RP11-1200B1 map 17, LOW-PASS SEQUENCE SAMPLING. 46 0.47 1
AC131253|AC131253.1 Homo sapiens chromosome 8 clone RP11-920J18 map 8, LOW-PASS SEQUENCE SAMPLING. 46 0.47 1
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54M35) RecName: Full=Putative lysozyme-like protein; Flags: Pr... 212 5e-54
(Q8T1G4) RecName: Full=Lysozyme A; EC=3.2.1.n1; AltName... 54 4e-06
DQ191207_1(DQ191207|pid:none) Sus scrofa coreanus isolate S6 mel... 34 2.5
BT066311_1(BT066311|pid:none) Drosophila melanogaster MIP05930 f... 33 5.5

protein update 2009. 4.18
PSORT

psg: 0.86 gvh: 0.65 alm: 0.45 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

24.0 %: extracellular, including cell wall
24.0 %: nuclear
20.0 %: cytoplasmic
20.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SLF140 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF140Z
3' end seq.
>SLF140Z.Seq
----------GGTGGTGTTGCTGGTTCAATCGCTAATGCCGCTTCATCAATTGCCTCTGT
TGCAAATTCAGTCTCATCAATGACCAATTCAGTTTCATCATTAGCTAAACTCAGTTTCAT
CATTAGCTGGTTCATCATCATCATCAGGTTCATCAGGTTCATCATCATCATCATCATCAT
CAGGTTCATCAGGTGGTTCATCAGGTGGTTCATCAGGTGGCGGTGGTGGTTCAGGTGAAT
TATTATCACAAAACCAAGTTTTCGCTACTTGTGTTAGAGTTATTTCAACCAATGTTGGAC
CAAATGTTGATATTGAAGATAAAATTGGTAAACCAATTATGGATGCATCAACAAAAGTTT
GCGAGGATCTCTTTGGATCACCATATTGTCAATGGACCGATAACCATATTGTTACTGCTG
TTTCAAGCAAATTAGATGATGGTTTCCCAACTCAAGGTGCATTCAATGTTACTCGTTCTC
AATACGGTTACATCATGGAAAATGGCCATTATTTAAATAATAAAGGAAACTCTGTTAGAA
TTAATTAAATAAATAATATATTAAACTAAGAATATAAAAAAAAAAAAAATAA
Length of 3' end seq. 582
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -