SLF137
Library SL
(Link to library)
Clone ID SLF137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16249-1
Original site URL
Representative seq. ID SLF137Z
(Link to Original site)
Representative DNA sequence
>SLF137 (SLF137Q) /CSM/SL/SLF1-B/SLF137Q.Seq.d/
XXXXXXXXXXTATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAA
AACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAAT
TACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCC
ATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTT
AGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGC
AGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAATATTATTGTG
ATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTG
TAAAAAAAAAAAAAATAAAAAAAAAATAAACACCTCCTTTTTTATTATTAAAAAAAAAAA
AAAAAAAAAA
sequence update 1999. 7.15
Translated Amino Acid sequence
---SKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPL
LKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPILL*s
nlcl*ntlisffvnflnnckkkknkkkintsffiikkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---iqrtlvnililhg*dlkqldqmtmv*svkvhsvveklqyqmlsfiyqiqlvnvihch
y*nvqvvrl*htlvmkivv*llqlalnlhsvpwvchfvqqviv*inseqlkqmdvqyycd
ptfvckth*flfllif*tivkkkkikkk*tppflllkkkkkk


Frame B:
---fkerw*if*fcmvri*ns*ir*lwfnrsryiq*wknynikcfhsftrsnw*m*fiai
ikmsrwfdydils**kslfsfsnlhsifilylgyatlssrlsfrsiqsn*skwmsniivi
qplfvkhinfffc*fskql*kkkk*kknkhllfyy*kkkkkk


Frame C:
---SKNVGKYFDSAWLGSKTVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPL
LKCPGGSIMTYSRNENRCLASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPILL*s
nlcl*ntlisffvnflnnckkkknkkkintsffiikkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF137 (SLF137Q) /CSM/SL/SLF1-B/SLF137Q.Seq.d/ 773 0.0
SSM753 (SSM753Q) /CSM/SS/SSM7-C/SSM753Q.Seq.d/ 755 0.0
SSM747 (SSM747Q) /CSM/SS/SSM7-B/SSM747Q.Seq.d/ 755 0.0
SSM721 (SSM721Q) /CSM/SS/SSM7-A/SSM721Q.Seq.d/ 755 0.0
SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/ 755 0.0
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/ 755 0.0
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/ 755 0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/ 755 0.0
SSK489 (SSK489Q) /CSM/SS/SSK4-D/SSK489Q.Seq.d/ 755 0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/ 755 0.0

own update 2003. 7.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 674 0.0 9
AL163204|AL163204.1 Homo sapiens genomic DNA, chromosome 21q, section 3/105. 48 0.098 1
AL109748|AL109748.2 Homo sapiens chromosome 21 PAC RPCIP704M13256Q2. 48 0.098 1
AC099401|AC099401.2 Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence. 46 0.39 1
AL162851|AL162851.6 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-186M12. 48 1.1 2
AC140384|AC140384.1 Mus musculus chromosome UNK clone RP23-166N20, WORKING DRAFT SEQUENCE, 12 unordered pieces. 44 1.5 1
AC092100|AC092100.5 Homo sapiens BAC clone RP11-666G4 from 7, complete sequence. 44 1.5 1
AC027169|AC027169.2 Homo sapiens chromosome 11 clone RP11-315F19 map 11, WORKING DRAFT SEQUENCE, 34 unordered pieces. 44 1.5 1
AZ126336|AZ126336.1 OSJNBb0076L02f CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone OSJNBb0076L02f, genomic survey sequence. 44 1.5 1
AC123440|AC123440.4 Rattus norvegicus clone CH230-462B20, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 2.0 4
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos... 243 3e-67
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos... 155 4e-38
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos... 99 4e-20
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom... 60 2e-08
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re... 34 1.5
AE000666_396(AE000666|pid:none) Methanothermobacter thermautotro... 34 2.0
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA... 33 3.4
(Q61554) RecName: Full=Fibrillin-1; Flags: Precursor; &A55624(A... 33 3.4
CP000826_2689(CP000826|pid:none) Serratia proteamaculans 568, co... 33 4.4
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 33 4.4
protein update 2009. 4.18
PSORT

psg: 0.76 gvh: 0.37 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for SLF137 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF137Z
3' end seq.
>SLF137Z.Seq
----------TATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAA
AACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAAT
TACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCC
ATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTT
AGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGC
AGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAATATTATTGTG
ATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTG
TAAAAAAAAAAAAAATAAAAAAAAAATAAACACCTCCTTTTTTATTATTAAAAAAAAAAA
AAAAAAAAAA
Length of 3' end seq. 480
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -