SLF134
Library SL
(Link to library)
Clone ID SLF134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01285-1
Original site URL
Representative seq. ID SLF134Z
(Link to Original site)
Representative DNA sequence
>SLF134 (SLF134Q) /CSM/SL/SLF1-B/SLF134Q.Seq.d/
XXXXXXXXXXAAGCAATGTCGAATCAACTCAAGATGTTGTTAAACATTAGTTCTACTGTT
GTAGCTGGGTCGCATTAACCCGAATAACATTGGAGTAACTTGAAATGTTCAACACCCAAC
CTTAACTACTCGCACGAATAGGTAAAAGGTGAGGTGGTGGTGATAGTGGAACATTTTAGT
TATTTCAATATCTCTAAATGGTAAAGTTATGGCTTTTTTCTTTGTGGTATCAATTACTTC
AAATAATGGCTATTTATAATCCATTTCTCCCCCTCCCTTCCCCTTTCTTCTTCTTAATTA
AATGGTTAGTCATCTTCATTGGTAACAACAGCAACTATTTATTATGTTGTAACAACAACG
CAACAATAGTAAATTAACAGTAGTCGTGTATCAGTACCTTTTTTTTTTTTTTTATAAATT
TTTTTTTTTATAAACAGTCAAAAATATCAGTCAAAGTCAATTAGTTTACAACATAAATCT
TTATTTAATAAAATAATATTGAAAATTGGTTTTATATGTTATAAAACTACATTTTTCATT
GTTTCCAAACAT
sequence update 1999. 7.15
Translated Amino Acid sequence
---snvestqdvvkh*fyccswvaltritle*lemfntqp*llarigkr*gggdsgtf*l
fqyl*MVKLWLFSLWYQLLQIMAIYNPFLPLPSPFFFLIKWLVIFIGNNSNYLLCCNNNA
TIVN*q*scistfffffinfffykqskisvkvn*ftt*ifi**nnienwfyml*nyifhc
fqt


Translated Amino Acid sequence (All Frames)
Frame A:
---snvestqdvvkh*fyccswvaltritle*lemfntqp*llarigkr*gggdsgtf*l
fqyl*MVKLWLFSLWYQLLQIMAIYNPFLPLPSPFFFLIKWLVIFIGNNSNYLLCCNNNA
TIVN*q*scistfffffinfffykqskisvkvn*ftt*ifi**nnienwfyml*nyifhc
fqt


Frame B:
---amsnqlkmllnisstvvagsh*pe*hwsnlkcstpnlnyshe*vkgevvvivehfsy
fniskw*sygfflcginyfk*wlfiihfspslplsss*lng*ssslvttatiyyvvtttq
q**inssrvsvpffffl*ifffinsqkyqsksislqhkslfnkiilkigficykttffiv
skh


Frame C:
---qcrinsrcc*tlvlll*lgrinpnnigvt*nvqhptlttrtnr*kvrww**wnilvi
sislngkvmafffvvsitsnngyl*sispppfpfllln*mvshlhw*qqqlfiml*qqrn
nskltvvvyqylffffykfffl*tvknisqsqlvyninlylik*y*klvlyviklhfslf
pn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF134 (SLF134Q) /CSM/SL/SLF1-B/SLF134Q.Seq.d/ 769 0.0
SLF146 (SLF146Q) /CSM/SL/SLF1-B/SLF146Q.Seq.d/ 571 e-162
VFM324 (VFM324Q) /CSM/VF/VFM3-A/VFM324Q.Seq.d/ 38 0.14
SFJ854 (SFJ854Q) /CSM/SF/SFJ8-C/SFJ854Q.Seq.d/ 38 0.14
AFK267 (AFK267Q) /CSM/AF/AFK2-C/AFK267Q.Seq.d/ 38 0.14
AFE669 (AFE669Q) /CSM/AF/AFE6-C/AFE669Q.Seq.d/ 38 0.14
VSF441 (VSF441Q) /CSM/VS/VSF4-B/VSF441Q.Seq.d/ 36 0.54
SSM152 (SSM152Q) /CSM/SS/SSM1-C/SSM152Q.Seq.d/ 36 0.54
SHE743 (SHE743Q) /CSM/SH/SHE7-B/SHE743Q.Seq.d/ 36 0.54
AHP609 (AHP609Q) /CSM/AH/AHP6-A/AHP609Q.Seq.d/ 36 0.54

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX004878|BX004878.7 Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6. 42 0.015 4
AC098067|AC098067.7 Rattus norvegicus clone CH230-117H22, WORKING DRAFT SEQUENCE, 1 ordered piece. 48 0.027 2
AL153224|AL153224.1 Anopheles gambiae GSS SP6 end of clone 25N02 of NotreDame1 library from strain PEST of Anopheles gambiae (African malaria mosquito). 50 0.028 1
AC084281|AC084281.5 Homo sapiens BAC clone RP11-755P23 from 4, complete sequence. 48 0.035 3
AC113395|AC113395.2 Homo sapiens chromosome 5 clone RP11-418P19, complete sequence. 32 0.061 5
AC007578|AC007578.5 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone BACR09A11, complete sequence. 46 0.072 2
AC137791|AC137791.1 Homo sapiens chromosome 16 clone RP11-321I5, WORKING DRAFT SEQUENCE, 35 unordered pieces. 48 0.083 3
AC104907|AC104907.5 Mus musculus clone RP24-231D8, LOW-PASS SEQUENCE SAMPLING. 40 0.096 2
AE003825|AE003825.3 Drosophila melanogaster chromosome 2R, section 25 of 74 of the complete sequence. 46 0.10 2
AL356135|AL356135.11 Human DNA sequence from clone RP11-396K16 on chromosome 6. 48 0.11 1
dna update 2003. 7.14
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 556,071,938
protein update 2009. 4.18
PSORT

psg: 0.92 gvh: 0.53 alm: 0.32 top: 0.47 tms: 0.07 mit: 0.40 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.38 leu: 0.19 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLF134 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF134Z
3' end seq.
>SLF134Z.Seq
----------AAGCAATGTCGAATCAACTCAAGATGTTGTTAAACATTAGTTCTACTGTT
GTAGCTGGGTCGCATTAACCCGAATAACATTGGAGTAACTTGAAATGTTCAACACCCAAC
CTTAACTACTCGCACGAATAGGTAAAAGGTGAGGTGGTGGTGATAGTGGAACATTTTAGT
TATTTCAATATCTCTAAATGGTAAAGTTATGGCTTTTTTCTTTGTGGTATCAATTACTTC
AAATAATGGCTATTTATAATCCATTTCTCCCCCTCCCTTCCCCTTTCTTCTTCTTAATTA
AATGGTTAGTCATCTTCATTGGTAACAACAGCAACTATTTATTATGTTGTAACAACAACG
CAACAATAGTAAATTAACAGTAGTCGTGTATCAGTACCTTTTTTTTTTTTTTTATAAATT
TTTTTTTTTATAAACAGTCAAAAATATCAGTCAAAGTCAATTAGTTTACAACATAAATCT
TTATTTAATAAAATAATATTGAAAATTGGTTTTATATGTTATAAAACTACATTTTTCATT
GTTTCCAAACAT
Length of 3' end seq. 542
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -