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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF131
Library SL
(Link to library)
Clone ID SLF131
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09191-1
Original site URL
Representative seq. ID SLF131P
(Link to Original site)
Representative DNA sequence 
>SLF131 (SLF131Q) /CSM/SL/SLF1-B/SLF131Q.Seq.d/
GATTTTTGTGATTTGTTAAATAAAGCTGTGATGTTTTACAAAGTCCAACGTGCAGGTCGT
TTACCAGATGATGATATTCCATGGAGAGGTAACTCTGCATTACAAGATGCAAGTCCAGGT
TCTCAACCAGATGCAAATGGTGATGGTGATCTTTCAAAGGGTTATTTTGATGCTGGTGAT
CATGTAAAATTTGGTTTCCCAATGGCTGGTTCAATGACAATGTTAGGGTGGGGTTATCTT
CAAAATAAGGAAGCCATTGAAAATTGTGGCGCTTCTAAAATCTATCTTGAGGATTTGCAA
TGGGGCTGGGACTGGTTAATGXXXXXXXXXXTTGGTAATCAAACTTATATCAATGACATT
GAAGGTTTCTTAAATTGGTGGTTACCAGGTGGAGGTGTTCCATACACTCCAGGTGGTTTG
GCTTGGATTAGAATGTGGGCACCAGCACGTTATGCAGCAACAACTTCCTTCCTTATGAGT
GTCTATGGTGGTGATAAATATACATCATTCACAGTTAAACAAATCGGATATATCCTTGGA
AATAATCCAAATCAACAATCATTTGTAGTTGGTATTGGTCCAAACCATCCAATTAATCCA
CATCATAGAGCTTCTCATCATTCTTTAACTGATAATATTATGTCACCAGTTAATAATACT
TATTTACATTTGGGTGCATTGGTTGGTGGCCCAGGTCAAGATGATTCATACAAAGATGAT
CGTACTGATTATGTTAAAAATGAAGTAGCATGTGATTATCAAGCTGGTTTTGTTGGTTCA
TTAGCTTTTTTAGCTTCTCAACAATAGATTCTTATGTTTTAATATTGTCAAATTATCATT
ATTCGACTCTCAAAAAATAAACTATATATTATTTATTATAAAA
sequence update 1999. 2.12
Translated Amino Acid sequence 
DFCDLLNKAVMFYKVQRAGRLPDDDIPWRGNSALQDASPGSQPDANGDGDLSKGYFDAGD
HVKFGFPMAGSMTMLGWGYLQNKEAIENCGASKIYLEDLQWGWDWLM---

---GNQTYINDIEGFLNWWLPGGGVPYTPGGLAWIRMWAPARYAATTSFLMSVYGGDKYT
SFTVKQIGYILGNNPNQQSFVVGIGPNHPINPHHRASHHSLTDNIMSPVNNTYLHLGALV
GGPGQDDSYKDDRTDYVKNEVACDYQAGFVGSLAFLASQQ*ilmf*ycqiiiirlsknkl
yiiyyk
Translated Amino Acid sequence (All Frames) 
Frame A:
DFCDLLNKAVMFYKVQRAGRLPDDDIPWRGNSALQDASPGSQPDANGDGDLSKGYFDAGD
HVKFGFPMAGSMTMLGWGYLQNKEAIENCGASKIYLEDLQWGWDWLM---

---lviklismtlkvs*iggyqvevfhtlqvvwlglecghqhvmqqqlpsl*vsmvvini
hhsqlnksdisleiiqinnhl*lvlvqtiqlihiielliil*liilchqliiliyiwvhw
lvaqvkmihtkmivlimlkmk*hviiklvllvh*lf*llnnrflcfnivklslfdsqkin
yilfiik

Frame B:
ifvic*ikl*cftksnvqvvyqmmifhgevtlhykmqvqvlnqmqmvmvifqrvilmlvi
m*nlvsqwlvq*qc*ggvifkirkplkivallksilricngagtg*---

---w*snlyq*h*rflklvvtrwrcsihsrwfgld*nvgtstlcsnnflpyeclww**iy
iihs*tnriypwk*skstiicswywskpsn*sts*sfssffn**yyvts**ylftfgcig
wwprsr*fiqr*sy*lc*k*ssm*lsswfcwfisffsfstidsyvlilsnyhystlkk*t
iyyll*

Frame C:
fl*fvk*scdvlqsptcrsftr**ysmer*lcitrcksrfstrckw*w*sfkglf*cw*s
ckiwfpngwfndnvrvglssk*gsh*klwrf*nls*gfamglglvn---

---GNQTYINDIEGFLNWWLPGGGVPYTPGGLAWIRMWAPARYAATTSFLMSVYGGDKYT
SFTVKQIGYILGNNPNQQSFVVGIGPNHPINPHHRASHHSLTDNIMSPVNNTYLHLGALV
GGPGQDDSYKDDRTDYVKNEVACDYQAGFVGSLAFLASQQ*ilmf*ycqiiiirlsknkl
yiiyyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF131 (SLF131Q) /CSM/SL/SLF1-B/SLF131Q.Seq.d/                       1691   0.0
VHH541 (VHH541Q) /CSM/VH/VHH5-B/VHH541Q.Seq.d/                         82   2e-14
SHD129 (SHD129Q) /CSM/SH/SHD1-B/SHD129Q.Seq.d/                         38   0.22
AHF212 (AHF212Q) /CSM/AH/AHF2-A/AHF212Q.Seq.d/                         38   0.22
VSJ204 (VSJ204Q) /CSM/VS/VSJ2-A/VSJ204Q.Seq.d/                         36   0.88
VSI262 (VSI262Q) /CSM/VS/VSI2-C/VSI262Q.Seq.d/                         36   0.88
VSH704 (VSH704Q) /CSM/VS/VSH7-A/VSH704Q.Seq.d/                         36   0.88
VSG784 (VSG784Q) /CSM/VS/VSG7-D/VSG784Q.Seq.d/                         36   0.88
VSF426 (VSF426Q) /CSM/VS/VSF4-B/VSF426Q.Seq.d/                         36   0.88
VSF115 (VSF115Q) /CSM/VS/VSF1-A/VSF115Q.Seq.d/                         36   0.88
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052805) Dictyostelium discoideum slug cDNA, clone SLF131.     1094   0.0    1
(AU061632) Dictyostelium discoideum slug cDNA, clone SLF131.      634   e-177  1
(M33861) Dictyostelium discoideum spore germination-specific...   113   2e-54  5
(BJ422533) Dictyostelium discoideum cDNA clone:ddv46a11, 5' ...    70   1e-17  2
(CR936328) Medicago truncatula chromosome 5 clone mth4-1f18,...    64   1e-05  1
(GM990389) Sequence 366 from Patent WO2008157370.                  64   1e-05  1
(CR491827) mth2-165K2FM1 BAC end, cultivar Jemalong A17 of M...    64   1e-05  1
(CR488170) mth2-157C8RM1 BAC end, cultivar Jemalong A17 of M...    64   1e-05  1
(CR307480) mte1-28O18RM1 BAC end, cultivar Jemalong A17 of M...    64   1e-05  1
(DW015127) EST1224088 MTY Medicago truncatula cDNA clone MTY...    64   1e-05  1
dna update 2009. 5. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22699) RecName: Full=Endoglucanase;          EC=3.2.1.4; AltNa...   236   1e-60
(P26221) RecName: Full=Endoglucanase E-4;          EC=3.2.1.4; A...   162   2e-38
AY445620_1(AY445620|pid:none) Bacillus licheniformis strain GXN1...   155   2e-36
CP000875_296(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2...   154   5e-36
AF180561_1(AF180561|pid:none) Myxobacter sp. AL-1 thermophilic e...   153   6e-36
(P23659) RecName: Full=Endoglucanase Z;          EC=3.2.1.4; Alt...   149   9e-35
X55299_1(X55299|pid:none) C.stercorarium celZ gene for endo-beta...   149   9e-35
CP000155_2351(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   149   2e-34
CP000885_3329(CP000885|pid:none) Clostridium phytofermentans ISD...   145   1e-33
CP000679_1025(CP000679|pid:none) Caldicellulosiruptor saccharoly...   143   9e-33
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLF131 is cyt
5' end seq. ID SLF131F
5' end seq. 
>SLF131F.Seq
GATTTTTGTGATTTGTTAAATAAAGCTGTGATGTTTTACAAAGTCCAACGTGCAGGTCGT
TTACCAGATGATGATATTCCATGGAGAGGTAACTCTGCATTACAAGATGCAAGTCCAGGT
TCTCAACCAGATGCAAATGGTGATGGTGATCTTTCAAAGGGTTATTTTGATGCTGGTGAT
CATGTAAAATTTGGTTTCCCAATGGCTGGTTCAATGACAATGTTAGGGTGGGGTTATCTT
CAAAATAAGGAAGCCATTGAAAATTGTGGCGCTTCTAAAATCTATCTTGAGGATTTGCAA
TGGGGCTGGGACTGGTTAATG----------
Length of 5' end seq. 321
3' end seq. ID SLF131Z
3' end seq. 
>SLF131Z.Seq
----------TTGGTAATCAAACTTATATCAATGACATTGAAGGTTTCTTAAATTGGTGG
TTACCAGGTGGAGGTGTTCCATACACTCCAGGTGGTTTGGCTTGGATTAGAATGTGGGCA
CCAGCACGTTATGCAGCAACAACTTCCTTCCTTATGAGTGTCTATGGTGGTGATAAATAT
ACATCATTCACAGTTAAACAAATCGGATATATCCTTGGAAATAATCCAAATCAACAATCA
TTTGTAGTTGGTATTGGTCCAAACCATCCAATTAATCCACATCATAGAGCTTCTCATCAT
TCTTTAACTGATAATATTATGTCACCAGTTAATAATACTTATTTACATTTGGGTGCATTG
GTTGGTGGCCCAGGTCAAGATGATTCATACAAAGATGATCGTACTGATTATGTTAAAAAT
GAAGTAGCATGTGATTATCAAGCTGGTTTTGTTGGTTCATTAGCTTTTTTAGCTTCTCAA
CAATAGATTCTTATGTTTTAATATTGTCAAATTATCATTATTCGACTCTCAAAAAATAAA
CTATATATTATTTATTATAAAA
Length of 3' end seq. 552
Connected seq. ID SLF131P
Connected seq. 
>SLF131P.Seq
GATTTTTGTGATTTGTTAAATAAAGCTGTGATGTTTTACAAAGTCCAACGTGCAGGTCGT
TTACCAGATGATGATATTCCATGGAGAGGTAACTCTGCATTACAAGATGCAAGTCCAGGT
TCTCAACCAGATGCAAATGGTGATGGTGATCTTTCAAAGGGTTATTTTGATGCTGGTGAT
CATGTAAAATTTGGTTTCCCAATGGCTGGTTCAATGACAATGTTAGGGTGGGGTTATCTT
CAAAATAAGGAAGCCATTGAAAATTGTGGCGCTTCTAAAATCTATCTTGAGGATTTGCAA
TGGGGCTGGGACTGGTTAATG----------TTGGTAATCAAACTTATATCAATGACATT
GAAGGTTTCTTAAATTGGTGGTTACCAGGTGGAGGTGTTCCATACACTCCAGGTGGTTTG
GCTTGGATTAGAATGTGGGCACCAGCACGTTATGCAGCAACAACTTCCTTCCTTATGAGT
GTCTATGGTGGTGATAAATATACATCATTCACAGTTAAACAAATCGGATATATCCTTGGA
AATAATCCAAATCAACAATCATTTGTAGTTGGTATTGGTCCAAACCATCCAATTAATCCA
CATCATAGAGCTTCTCATCATTCTTTAACTGATAATATTATGTCACCAGTTAATAATACT
TATTTACATTTGGGTGCATTGGTTGGTGGCCCAGGTCAAGATGATTCATACAAAGATGAT
CGTACTGATTATGTTAAAAATGAAGTAGCATGTGATTATCAAGCTGGTTTTGTTGGTTCA
TTAGCTTTTTTAGCTTCTCAACAATAGATTCTTATGTTTTAATATTGTCAAATTATCATT
ATTCGACTCTCAAAAAATAAACTATATATTATTTATTATAAAA
Length of connected seq. 873
Full length Seq ID -
Full length Seq. -
Length of full length seq. -