>SLF129 (SLF129Q) /CSM/SL/SLF1-B/SLF129Q.Seq.d/
XXXXXXXXXXTTGTTGGTTTAGTTTACATTGCCGCATTTGCTCCCGATGAAGGTGATAGT
TTATTTGGTATTTTCAGCAGAAGAGAACAACCAAGTGGCGGTGCAAATATTTTACCAGCA
GATAAAAAAGGATTCCTTTGGATTAACTATGATAAATTTCCAGAATCGTTTTGTCAAGAT
TTGCCAAAAGATGATGCTATGGTATTGTCAATTTCTCAAAAACCAATTCACTCAAATGGA
TTCTCTGATAAATTAAACTGTAAACCAGCATGGAGAACCAAACCAAGTTGGTACCAAGTT
TCAAATAATGATAATATGATTCCACCTGAAACTGAACTTGAAATGGCAAAATACATAAAT
GCAAAGAAAATAATTCATCTAAATGCTTCACATGCTTCACTTGCATCACATCCAAAAGAA
GTTTTTTCATTAATCACAGAAGCTGCCAATTCTTTAAATTCAAAACTTCCATCAAATTAA
ATCAAAAAAAAA

---VGLVYIAAFAPDEGDSLFGIFSRREQPSGGANILPADKKGFLWINYDKFPESFCQDL
PKDDAMVLSISQKPIHSNGFSDKLNCKPAWRTKPSWYQVSNNDNMIPPETELEMAKYINA
KKIIHLNASHASLASHPKEVFSLITEAANSLNSKLPSN*ikkk

Frame A:
---cwfslhcricsr*r**fiwyfqqkrttkwrckyftsr*kripld*l**isrivlsrf
akr*cygivnfsktnslkwil**ikl*tsmenqtklvpsfk***ydst*n*t*ngkihkc
kennsskcftcftcitskrsffinhrscqffkfktsiklnqkk


Frame B:
---VGLVYIAAFAPDEGDSLFGIFSRREQPSGGANILPADKKGFLWINYDKFPESFCQDL
PKDDAMVLSISQKPIHSNGFSDKLNCKPAWRTKPSWYQVSNNDNMIPPETELEMAKYINA
KKIIHLNASHASLASHPKEVFSLITEAANSLNSKLPSN*ikkk


Frame C:
---lv*ftlphllpmkvivylvfsaeennqvavqifyqqikkdsfgltminfqnrfvkic
qkmmlwycqflknqftqmdslin*tvnqhgepnqvgtkfqimii*fhlklnlkwqnt*mq
rk*fi*mlhmlhlhhiqkkffh*sqklpil*iqnfhqikskk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK385 (SSK385Q) /CSM/SS/SSK3-D/SSK385Q.Seq.d/                        938   0.0
SSK111 (SSK111Q) /CSM/SS/SSK1-A/SSK111Q.Seq.d/                        938   0.0
SSE527 (SSE527Q) /CSM/SS/SSE5-B/SSE527Q.Seq.d/                        938   0.0
SSC807 (SSC807Q) /CSM/SS/SSC8-A/SSC807Q.Seq.d/                        938   0.0
SLF275 (SLF275Q) /CSM/SL/SLF2-D/SLF275Q.Seq.d/                        938   0.0
SLF129 (SLF129Q) /CSM/SL/SLF1-B/SLF129Q.Seq.d/                        938   0.0
SLB866 (SLB866Q) /CSM/SL/SLB8-C/SLB866Q.Seq.d/                        938   0.0
SSC654 (SSC654Q) /CSM/SS/SSC6-C/SSC654Q.Seq.d/                        930   0.0
CHO442 (CHO442Q) /CSM/CH/CHO4-B/CHO442Q.Seq.d/                        882   0.0
SSD113 (SSD113Q) /CSM/SS/SSD1-A/SSD113Q.Seq.d/                        852   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF447045|AF447045.1 Plectritis macrocera NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast gene for chloroplast product.    38  0.19  2
CD513089|CD513089.1 AGENCOURT_14371904 NIH_MGC_179 Homo sapiens cDNA clone IMAGE:30394198 5', mRNA sequence.    40  0.34  2
D72202|D72202.1 C.elegans cDNA clone yk91c9 : 3' end, single read.    46  0.39  1
D71864|D71864.1 C.elegans cDNA clone yk82h1 : 3' end, single read.    46  0.39  1
BX470141|BX470141.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-110M20.    46  0.39  1
D71880|D71880.1 C.elegans cDNA clone yk83b9 : 3' end, single read.    46  0.39  1
D71203|D71203.1 C.elegans cDNA clone yk63f1 : 3' end, single read.    46  0.39  1
AL161532|AL161532.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32.    44  0.52  7
BX005400|BX005400.7 Zebrafish DNA sequence from clone CH211-203C7.    46  0.69  2
BX195084|BX195084.1 Danio rerio genomic clone DKEY-206D23, genomic survey sequence.    36  0.97  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM286415_2692(AM286415|pid:none) Yersinia enterocolitica subsp. ...   155   4e-37
CP000076_2829(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...   147   2e-34
CP000744_2439(CP000744|pid:none) Pseudomonas aeruginosa PA7, com...   145   5e-34
AY658153_1(AY658153|pid:none) Synthetic construct Peudomonas aer...   143   2e-33
CP000631_166(CP000631|pid:none) Agrobacterium radiobacter K84 pl...   136   2e-31
CP001111_1500(CP001111|pid:none) Stenotrophomonas maltophilia R5...   136   3e-31
CP000740_267(CP000740|pid:none) Sinorhizobium medicae WSM419 pla...   103   2e-21
AE003851_33(AE003851|pid:none) Xylella fastidiosa 9a5c plasmid p...   103   2e-21
AP009552_1975(AP009552|pid:none) Microcystis aeruginosa NIES-843...   101   8e-21
CP001052_1465(CP001052|pid:none) Burkholderia phytofirmans PsJN ...   101   1e-20

 psg: 0.92  gvh: 0.41  alm: 0.48  top: 0.33  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLF129 is nuc

>SLF129Z.Seq
----------TTGTTGGTTTAGTTTACATTGCCGCATTTGCTCCCGATGAAGGTGATAGT
TTATTTGGTATTTTCAGCAGAAGAGAACAACCAAGTGGCGGTGCAAATATTTTACCAGCA
GATAAAAAAGGATTCCTTTGGATTAACTATGATAAATTTCCAGAATCGTTTTGTCAAGAT
TTGCCAAAAGATGATGCTATGGTATTGTCAATTTCTCAAAAACCAATTCACTCAAATGGA
TTCTCTGATAAATTAAACTGTAAACCAGCATGGAGAACCAAACCAAGTTGGTACCAAGTT
TCAAATAATGATAATATGATTCCACCTGAAACTGAACTTGAAATGGCAAAATACATAAAT
GCAAAGAAAATAATTCATCTAAATGCTTCACATGCTTCACTTGCATCACATCCAAAAGAA
GTTTTTTCATTAATCACAGAAGCTGCCAATTCTTTAAATTCAAAACTTCCATCAAATTAA
ATCAAAAAAAAA