>SLF127 (SLF127Q) /CSM/SL/SLF1-B/SLF127Q.Seq.d/
XXXXXXXXXXCAAGGTACAATCTATGCATCTGAAGGTGTTTATCATCCATCAGATTTAAG
AATAAAATATGATTTGAAATCGATCGACTCAAAATCAAATCTTGACAATGTAAATAGAAT
GAAACTTTACGACTATAAATATAATCCACAATGGACTCATATGAATGGTAGGGATCCATA
TTTAGATAATTGTGATAGAGGTGTTATCGCCCAAGATCTTCAAAGAATTTTACCAAATGC
AGTACGTACCATTGGTAATAAGAATGTAAATGGCCAAGAAATTGAAAATCTTTTAGTAAT
TAAAAATGAAGCTTTAGTAATGGAAACAATTGGTGCAACTCAAGAACTTTCAAAACAAAT
GGATGAAATGAAATTAAAATTAATTACCTATGAATCAAAATTAAAAAATTTAAAAAAGAA
ATCAAAAAATCAAACTATTCTATTGATTATATTCATGATAACCTTTTTATTGGTTGCTCT
CTATATGTATAAACCATCAACCCATCATAGTCATCATCGTCGTCATAATTTTGATAATAA
TGATAATTAAAAAATAAAATAGTATAATAAAATAAAATAAAATAAATAAGTAATATTAAA
ATAAT

---GTIYASEGVYHPSDLRIKYDLKSIDSKSNLDNVNRMKLYDYKYNPQWTHMNGRDPYL
DNCDRGVIAQDLQRILPNAVRTIGNKNVNGQEIENLLVIKNEALVMETIGATQELSKQMD
EMKLKLITYESKLKNLKKKSKNQTILLIIFMITFLLVALYMYKPSTHHSHHRRHNFDNND
N*kik*ynkik*nk*vilk*

Frame A:
---kvqsmhlkvfiihqi*e*nmi*nrstqnqiltm*ie*nfttiniihngli*mvgihi
*iivievlspkifkefyqmqyvplvirm*makklkif**lkmkl**wkqlvqlknfqnkw
mk*n*n*lpmnqn*ki*krnqkiklfy*lys**pfywllsicinhqpiiviivviiliim
iikk*nsiik*nkink*y*nn


Frame B:
---rynlci*rclssirfknki*feidrlkiks*qck*netlrl*i*stmdsyew*gsif
r*l**rcyrprssknftkcstyhw**eckwprn*ksfsn*k*sfsngnnwcnsrtfktng
*neikinyl*ikikkfkkeikksnysidyihdnlfigcslyv*tinps*sssss*f****
*lknkiv**nkik*isniki


Frame C:
---GTIYASEGVYHPSDLRIKYDLKSIDSKSNLDNVNRMKLYDYKYNPQWTHMNGRDPYL
DNCDRGVIAQDLQRILPNAVRTIGNKNVNGQEIENLLVIKNEALVMETIGATQELSKQMD
EMKLKLITYESKLKNLKKKSKNQTILLIIFMITFLLVALYMYKPSTHHSHHRRHNFDNND
N*kik*ynkik*nk*vilk*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA107 (SSA107Q) /CSM/SS/SSA1-A/SSA107Q.Seq.d/                        678   0.0
SLF127 (SLF127Q) /CSM/SL/SLF1-B/SLF127Q.Seq.d/                        678   0.0
CHM338 (CHM338Q) /CSM/CH/CHM3-B/CHM338Q.Seq.d/                        678   0.0
SLE771 (SLE771Q) /CSM/SL/SLE7-C/SLE771Q.Seq.d/                        634   0.0
SLD434 (SLD434Q) /CSM/SL/SLD4-B/SLD434Q.Seq.d/                        408   e-113
SHH446 (SHH446Q) /CSM/SH/SHH4-B/SHH446Q.Seq.d/                         36   0.60
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                         36   0.60
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                         36   0.60
CHK704 (CHK704Q) /CSM/CH/CHK7-A/CHK704Q.Seq.d/                         36   0.60
AHN828 (AHN828Q) /CSM/AH/AHN8-B/AHN828Q.Seq.d/                         36   0.60

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U66369|U66369.1 Dictyostelium discoideum ORFveg132 mRNA, partial cds.   684  0.0  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38  0.19  7
AE014944|AE014944.1 Streptococcus mutans UA159 section 92 of 185 of the complete genome.    44  0.37  2
AC117157|AC117157.6 Rattus norvegicus clone CH230-162B12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  0.38  2
BX548015|BX548015.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.48  1
AC135661|AC135661.2 Rattus norvegicus clone CH230-14I23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.48  1
AC021536|AC021536.3 Homo sapiens chromosome 15 clone RP11-420H20 map 15, WORKING DRAFT SEQUENCE, 22 unordered pieces.    42  0.81  3
AE015942|AE015942.1 Clostridium tetani E88, section 7 of 10 of the complete genome.    36  1.2  7
BU352659|BU352659.1 603530024F1 CSEQCHN69 Gallus gallus cDNA clone ChEST482p5 5', mRNA sequence.    44  1.9  1
U88582|U88582.2 Streptococcus mutans ProX (opuABC) gene, partial cds; YlxM (ylxM) gene, complete cds; Ffh (ffh) gene, complete cds, alternatively spliced; SatC (satC) and SatD (satD) genes, complete cds; and SatE (satE) gene, partial cds.    44  1.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q66IV1) RecName: Full=Uncharacterized protein C11orf9 homolog; ...    86   6e-16
AB023171_1(AB023171|pid:none) Homo sapiens mRNA for KIAA0954 pro...    86   1e-15
(Q9Y2G1) RecName: Full=Uncharacterized protein C11orf9;  &AB3854...    86   1e-15
AF086762_1(AF086762|pid:none) Homo sapiens C11orf9 mRNA, complet...    86   1e-15
AK141695_1(AK141695|pid:none) Mus musculus 9 days embryo whole b...    85   1e-15
AK039649_1(AK039649|pid:none) Mus musculus adult male spinal cor...    85   1e-15
BC157942_1(BC157942|pid:none) Mus musculus gene model 98, (NCBI)...    85   1e-15
AK144411_1(AK144411|pid:none) Mus musculus adult male intestinal...    76   6e-13
BC148934_1(BC148934|pid:none) Bos taurus hypothetical protein LO...    75   2e-12
AE013599_4061(AE013599|pid:none) Drosophila melanogaster chromos...    70   4e-11

 psg: 0.75  gvh: 0.21  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLF127 is nuc

>SLF127Z.Seq
----------CAAGGTACAATCTATGCATCTGAAGGTGTTTATCATCCATCAGATTTAAG
AATAAAATATGATTTGAAATCGATCGACTCAAAATCAAATCTTGACAATGTAAATAGAAT
GAAACTTTACGACTATAAATATAATCCACAATGGACTCATATGAATGGTAGGGATCCATA
TTTAGATAATTGTGATAGAGGTGTTATCGCCCAAGATCTTCAAAGAATTTTACCAAATGC
AGTACGTACCATTGGTAATAAGAATGTAAATGGCCAAGAAATTGAAAATCTTTTAGTAAT
TAAAAATGAAGCTTTAGTAATGGAAACAATTGGTGCAACTCAAGAACTTTCAAAACAAAT
GGATGAAATGAAATTAAAATTAATTACCTATGAATCAAAATTAAAAAATTTAAAAAAGAA
ATCAAAAAATCAAACTATTCTATTGATTATATTCATGATAACCTTTTTATTGGTTGCTCT
CTATATGTATAAACCATCAACCCATCATAGTCATCATCGTCGTCATAATTTTGATAATAA
TGATAATTAAAAAATAAAATAGTATAATAAAATAAAATAAAATAAATAAGTAATATTAAA
ATAAT