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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF126
Library SL
(Link to library)
Clone ID SLF126
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13338-1|Contig-U15591-1
Original site URL
Representative seq. ID SLF126P
(Link to Original site)
Representative DNA sequence 
>SLF126 (SLF126Q) /CSM/SL/SLF1-B/SLF126Q.Seq.d/
AAAAAAAAAAAAAAAGAAACAAAAAAAAAAAAAAAAAGAAATTTATTTATTTTTTTATTT
TTTGTTTTAAGCATGTATCAAAAAAGATATGGATTTGGATTATAGTAGTGACAATTCGAG
ATTAGTAGCTGACAACCAAAACAATAAAACCAACACAAAAAATCAATCACAGCTATCTAC
ATCTTCACAAATACCACAAACATCACAATCATATCAACAACAACAACAACACAATCAACA
ACAACAACAACAACAACAACAAAAACAAAACTCACGACCTTCAAGCCCAAAAACGATTCA
AGCAAAGGXXXXXXXXXXAGATTTAATTGAAAAACCAAATGAAGAGGAACCTCAAAATGG
AACAATCAATGAACAACCAATAGCAATGACAATCGATAATACTTTGGAAAGTAATAAACC
AATAGAAACAATACAGCCTTCATCTTTGGAAAAACAGGAACCAAAAGAAACTGAATTACA
AACACAACAACAGCCACAAACAGAGTTAAAATCAGAATTAGAACCACAACAACTTCAATT
AATACAAGAAAAAGATAAAAATATAAACAATTTATCAATTGATTCAAATCATATGGATAC
ATCGAAAATAGAAGCAGGCAATAATATTTCAAATCAAACCCAATCGAATATTATAAGCTC
TGTAGTTCAAACAATTGAACCTCTTAAAGAATGTAACAAGATCGATCTTGATAATAATAA
TAATAATAATAATAATAATAATAATAATAAAAATAATAAAAACAATAATAATAATAATAA
AACAACAAAA
sequence update 1999. 2.12
Translated Amino Acid sequence 
kkkkkkqkkkkkeiylffyflf*ACIKKDMDLDYSSDNSRLVADNQNNKTNTKNQSQLST
SSQIPQTSQSYQQQQQHNQQQQQQQQQKQNSRPSSPKTIQAK---

---DLIEKPNEEEPQNGTINEQPIAMTIDNTLESNKPIETIQPSSLEKQEPKETELQTQQ
QPQTELKSELEPQQLQLIQEKDKNINNLSIDSNHMDTSKIEAGNNISNQTQSNIISSVVQ
TIEPLKECNKIDLDNNNNNNNNNNNNKNNKNNNNNNKTTK
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkketkkkkkrnlfiflffvlsmyqkrygfgl***qfeiss*qpkq*nqhkksitaiy
iftnttnitiistttttqsttttttttktklttfkpkndssk---

---rfn*ktk*rgtskwnnq*ttnsndnr*yfgk**tnrnntafifgktgtkrn*itntt
tatnrvkirirttttsintrkr*kykqfin*fksygyienrsrq*yfksnpieyyklcss
nn*ts*rm*qdrs**************k**kq*****nnk

Frame B:
kkkkkkqkkkkkeiylffyflf*ACIKKDMDLDYSSDNSRLVADNQNNKTNTKNQSQLST
SSQIPQTSQSYQQQQQHNQQQQQQQQQKQNSRPSSPKTIQAK---

---DLIEKPNEEEPQNGTINEQPIAMTIDNTLESNKPIETIQPSSLEKQEPKETELQTQQ
QPQTELKSELEPQQLQLIQEKDKNINNLSIDSNHMDTSKIEAGNNISNQTQSNIISSVVQ
TIEPLKECNKIDLDNNNNNNNNNNNNKNNKNNNNNNKTTK

Frame C:
kkkkrnkkkkkkkfiyffifcfkhvskkiwiwiivvtird**lttktikptqkinhsylh
lhkyhkhhnhinnnnntinnnnnnnnknkthdlqaqkrfkqr---

---i*lknqmkrnlkmeqsmnnq*q*qsiilwkvinq*kqyslhlwknrnqkklnykhnn
shkqs*nqn*nhnnfn*ykkkiki*tiyqliqiiwihrk*kqaiifqikpnril*al*fk
qlnllknvtrsiliiiiiiiiiiiiikiiktiiiiikqq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF126 (SLF126Q) /CSM/SL/SLF1-B/SLF126Q.Seq.d/                        811   0.0
AHO513 (AHO513Q) /CSM/AH/AHO5-A/AHO513Q.Seq.d/                         46   8e-04
AHK319 (AHK319Q) /CSM/AH/AHK3-A/AHK319Q.Seq.d/                         44   0.003
VHN191 (VHN191Q) /CSM/VH/VHN1-D/VHN191Q.Seq.d/                         40   0.050
FC-IC1761 (FC-IC1761Q) /CSM/FC-IC/FC-IC1761Q.Seq.d/                    40   0.050
AHL874 (AHL874Q) /CSM/AH/AHL8-D/AHL874Q.Seq.d/                         38   0.20
SSE587 (SSE587Q) /CSM/SS/SSE5-D/SSE587Q.Seq.d/                         38   0.20
SSB573 (SSB573Q) /CSM/SS/SSB5-D/SSB573Q.Seq.d/                         38   0.20
SHE195 (SHE195Q) /CSM/SH/SHE1-D/SHE195Q.Seq.d/                         38   0.20
SFG445 (SFG445Q) /CSM/SF/SFG4-B/SFG445Q.Seq.d/                         38   0.20
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC142286|AC142286.1 Pan troglodytes chromosome 7 clone RP43-169G24, complete sequence.    44  0.031  5
CF083766|CF083766.1 QHL20I17.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL20I17, mRNA sequence.    50  0.042  1
AC020984|AC020984.4 Homo sapiens clone RP11-115M9, WORKING DRAFT SEQUENCE, 2 ordered pieces.    42  0.50  2
AL139132|AL139132.16 Human DNA sequence from clone RP11-177A2 on chromosome 1q25.1-31.3.    44  0.52  2
AL108699|AL108699.1 Drosophila melanogaster genome survey sequence T7 end of BAC  BACN37F05 of DrosBAC library from Drosophila melanogaster (fruit  fly).    46  0.66  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36  0.75  8
AX659111|AX659111.1 Sequence 82 from Patent WO02103041.           34  0.82  3
AX657837|AX657837.1 Sequence 82 from Patent WO02103042.           34  0.82  3
AC123131|AC123131.4 Rattus norvegicus clone CH230-88D5, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  0.95  3
AL409125|AL409125.1 T3 end of clone AV0AA012H03 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    38  0.95  2
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U7C9) RecName: Full=Nucleomorphin; AltName: Full=Calmodulin-b...   150   6e-35
protein update 2009. 1.23
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLF126 is nuc
5' end seq. ID SLF126F
5' end seq. 
>SLF126F.Seq
AAAAAAAAAAAAAAAGAAACAAAAAAAAAAAAAAAAAGAAATTTATTTATTTTTTTATTT
TTTGTTTTAAGCATGTATCAAAAAAGATATGGATTTGGATTATAGTAGTGACAATTCGAG
ATTAGTAGCTGACAACCAAAACAATAAAACCAACACAAAAAATCAATCACAGCTATCTAC
ATCTTCACAAATACCACAAACATCACAATCATATCAACAACAACAACAACACAATCAACA
ACAACAACAACAACAACAACAAAAACAAAACTCACGACCTTCAAGCCCAAAAACGATTCA
AGCAAAGG----------
Length of 5' end seq. 308
3' end seq. ID SLF126Z
3' end seq. 
>SLF126Z.Seq
----------AGATTTAATTGAAAAACCAAATGAAGAGGAACCTCAAAATGGAACAATCA
ATGAACAACCAATAGCAATGACAATCGATAATACTTTGGAAAGTAATAAACCAATAGAAA
CAATACAGCCTTCATCTTTGGAAAAACAGGAACCAAAAGAAACTGAATTACAAACACAAC
AACAGCCACAAACAGAGTTAAAATCAGAATTAGAACCACAACAACTTCAATTAATACAAG
AAAAAGATAAAAATATAAACAATTTATCAATTGATTCAAATCATATGGATACATCGAAAA
TAGAAGCAGGCAATAATATTTCAAATCAAACCCAATCGAATATTATAAGCTCTGTAGTTC
AAACAATTGAACCTCTTAAAGAATGTAACAAGATCGATCTTGATAATAATAATAATAATA
ATAATAATAATAATAATAATAAAAATAATAAAAACAATAATAATAATAATAAAACAACAA
AA
Length of 3' end seq. 472
Connected seq. ID SLF126P
Connected seq. 
>SLF126P.Seq
AAAAAAAAAAAAAAAGAAACAAAAAAAAAAAAAAAAAGAAATTTATTTATTTTTTTATTT
TTTGTTTTAAGCATGTATCAAAAAAGATATGGATTTGGATTATAGTAGTGACAATTCGAG
ATTAGTAGCTGACAACCAAAACAATAAAACCAACACAAAAAATCAATCACAGCTATCTAC
ATCTTCACAAATACCACAAACATCACAATCATATCAACAACAACAACAACACAATCAACA
ACAACAACAACAACAACAACAAAAACAAAACTCACGACCTTCAAGCCCAAAAACGATTCA
AGCAAAGG----------AGATTTAATTGAAAAACCAAATGAAGAGGAACCTCAAAATGG
AACAATCAATGAACAACCAATAGCAATGACAATCGATAATACTTTGGAAAGTAATAAACC
AATAGAAACAATACAGCCTTCATCTTTGGAAAAACAGGAACCAAAAGAAACTGAATTACA
AACACAACAACAGCCACAAACAGAGTTAAAATCAGAATTAGAACCACAACAACTTCAATT
AATACAAGAAAAAGATAAAAATATAAACAATTTATCAATTGATTCAAATCATATGGATAC
ATCGAAAATAGAAGCAGGCAATAATATTTCAAATCAAACCCAATCGAATATTATAAGCTC
TGTAGTTCAAACAATTGAACCTCTTAAAGAATGTAACAAGATCGATCTTGATAATAATAA
TAATAATAATAATAATAATAATAATAATAAAAATAATAAAAACAATAATAATAATAATAA
AACAACAAAA
Length of connected seq. 780
Full length Seq ID -
Full length Seq. -
Length of full length seq. -