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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLF113
Library SL
(Link to library)
Clone ID SLF113
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLF113Z
(Link to Original site)
Representative DNA sequence 
>SLF113 (SLF113Q) /CSM/SL/SLF1-A/SLF113Q.Seq.d/
XXXXXXXXXXCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCAT
CAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAAC
GTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTA
TCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTAT
ACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAG
AACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAAC
AAATGTGGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTGTTCACAGAAAAT
GTTTCTAAATTATTTAATAAATAATAAAAAAACAAATTGTTGTAATAATCTT
sequence update 1999. 7.15
Translated Amino Acid sequence 
---YVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGI
HETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE
RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*ii**iikkqivvii
Translated Amino Acid sequence (All Frames) 
Frame A:
---YVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGI
HETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE
RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*ii**iikkqivvii


Frame B:
---tspstlklkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnllvs
tkppttps*nvmlisvkiytvtssypvvqlcsqvlliv*tkn*ll*phqp*klksllhqn
vntlsglvdls*lhsqlsnkcgspkknttnqvhqlftenvsklfnk**knkll**s


Frame C:
---rrprl*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygicwyp
rnhlqlhhem*c*yp*rfir*rrlirwynyvpryc*syeqrincfspinhen*nhcstrt
*ilcldwwiylsftlnfptnvdlqrrirrirsincsqkmflnylinnkktnccnnl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF113 (SLF113Q) /CSM/SL/SLF1-A/SLF113Q.Seq.d/                        993   0.0
SLG853 (SLG853Q) /CSM/SL/SLG8-C/SLG853Q.Seq.d/                        991   0.0
SLG253 (SLG253Q) /CSM/SL/SLG2-C/SLG253Q.Seq.d/                        991   0.0
SLC251 (SLC251Q) /CSM/SL/SLC2-C/SLC251Q.Seq.d/                        991   0.0
SLB768 (SLB768Q) /CSM/SL/SLB7-C/SLB768Q.Seq.d/                        991   0.0
SLB192 (SLB192Q) /CSM/SL/SLB1-D/SLB192Q.Seq.d/                        991   0.0
FC-AG07 (FC-AG07Q) /CSM/FC/FC-AG/FC-AG07Q.Seq.d/                      991   0.0
FC-BS18 (FC-BS18Q) /CSM/FC/FC-BS/FC-BS18Q.Seq.d/                      983   0.0
FC-BS03 (FC-BS03Q) /CSM/FC/FC-BS/FC-BS03Q.Seq.d/                      983   0.0
VFN217 (VFN217Q) /CSM/VF/VFN2-A/VFN217Q.Seq.d/                        981   0.0
own update 2003. 6.11
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03281|X03281.1 Dictyostelium discoideum gene for actin A8.      948  0.0  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   910  0.0  3
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        841  0.0  1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   841  0.0  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   783  0.0  4
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   731  0.0  8
X03282|X03282.1 dictyostelium discoideum gene for actin A12.     668  0.0  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   670  0.0  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   579  e-161  1
K02960|K02960.1 Slime mold (D.discoideum) actin 8 gene, 3' end.   549  e-156  2
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   319   2e-86
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   319   2e-86
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        319   2e-86
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   315   4e-85
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   315   4e-85
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   315   4e-85
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          312   3e-84
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   312   4e-84
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   311   6e-84
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   310   2e-83
protein update 2009. 4.18
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLF113 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF113Z
3' end seq. 
>SLF113Z.Seq
----------CTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCAT
CAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAAC
GTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTA
TCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTAT
ACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAG
AACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAAC
AAATGTGGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTGTTCACAGAAAAT
GTTTCTAAATTATTTAATAAATAATAAAAAAACAAATTGTTGTAATAATCTT
Length of 3' end seq. 522
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -