>SLF108 (SLF108Q) /CSM/SL/SLF1-A/SLF108Q.Seq.d/
XXXXXXXXXXCCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCATCCACTAT
TGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCAC
TGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATC
AAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGA
TGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAA
TGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGA
AGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAA
TAACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTT
TTAATATTCAAAGACTTTACAAAAAAAAAAA

---IIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSDEESS
DPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEE
YAFY*iklffikk****fnn*slssiitl*yyfnnntff*ysktlqkkk

Frame A:
---qlfqsvsihqllphpllplqlhqlvtqlpqqlph*slvpqvvvvvwvhlvvdpmknq
viqmlylvslktifsgvimmntlvittvmlmkkilmkismvmmnlklmlkviskkmiskk
nmhfiklnffs*knnnnnlitnhyhq**hynitlitilffniqrlykkk


Frame B:
---nysnlyqsinycrihychyncinsslnclnnclishwyhkwwwwygfiwwsir*rik
*skcytwsl*rryflg****il***lplc**rry**rfqw***i*n*c*r*fprr*frrr
icilln*tffhkkiiiii**liiiinnniiill**qyfflifkdftkkk


Frame C:
---IIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGGRSDEESS
DPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDFNGNDEFEIDVEGDFQEDDFEEE
YAFY*iklffikk****fnn*slssiitl*yyfnnntff*ysktlqkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        745   0.0
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/                        745   0.0
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/                        745   0.0
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/                        745   0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                        745   0.0
SSG296 (SSG296Q) /CSM/SS/SSG2-D/SSG296Q.Seq.d/                        745   0.0
SSF391 (SSF391Q) /CSM/SS/SSF3-D/SSF391Q.Seq.d/                        745   0.0
SSF386 (SSF386Q) /CSM/SS/SSF3-D/SSF386Q.Seq.d/                        745   0.0
SSF203 (SSF203Q) /CSM/SS/SSF2-A/SSF203Q.Seq.d/                        745   0.0
SSE674 (SSE674Q) /CSM/SS/SSE6-D/SSE674Q.Seq.d/                        745   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   712  0.0  3
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   712  0.0  1
CA855068|CA855068.1 PfESToac46b06.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    50  0.026  1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50  0.026  1
BE217634|BE217634.1 MD0264 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2993 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence.    48  0.10  1
CC755907|CC755907.1 ZMMBBb0141C12.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0141C12 3', genomic survey sequence.    46  0.40  1
AG232038|AG232038.1 Lotus japonicus DNA, clone:LjB22l20_f.        46  0.40  1
CD017930|CD017930.1 NXCI_150_D11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_150_D11 5', mRNA sequence.    34  0.74  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40  0.97  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40  1.0  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   113   2e-24
(Q1AGV7) RecName: Full=Syndecan 4-A; AltName: Full=Syndecan-4.1;...    36   0.45
BC131894_1(BC131894|pid:none) Xenopus laevis syndecan-4.1, mRNA ...    36   0.45
A96599(A96599) protein F20N2.10 [imported] - Arabidopsis thalian...    35   1.3
CP000492_1690(CP000492|pid:none) Chlorobium phaeobacteroides DSM...    33   3.8
EF568108_144(EF568108|pid:none) Glossina pallidipes salivary gla...    33   3.8
AE001362_82(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    33   3.8
AY579380_1(AY579380|pid:none) Pristionchus pacificus transformer...    33   5.0
CP000107_18(CP000107|pid:none) Ehrlichia canis str. Jake, comple...    32   6.5
AE014187_110(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   6.5

 psg: 0.90  gvh: 0.53  alm: 0.37  top: 0.57  tms: 0.00  mit: 0.44  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLF108 is mit

>SLF108Z.Seq
----------CCAATTATTCCAATCTGTATCAATCCATCAACTATTGCCGCATCCACTAT
TGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCAACAATTGCCTCATTAGTCAC
TGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGTGGTCGATCCGATGAAGAATC
AAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGATATTTTCTGGGGTGATAATGA
TGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTCAA
TGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGA
AGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAA
TAACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTT
TTAATATTCAAAGACTTTACAAAAAAAAAAA