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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE888
Library SL
(Link to library)
Clone ID SLE888
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15393-1
Original site URL
Representative seq. ID SLE888Z
(Link to Original site)
Representative DNA sequence 
>SLE888 (SLE888Q) /CSM/SL/SLE8-D/SLE888Q.Seq.d/
XXXXXXXXXXTCAATTGCTTCTACTATTGCTTCAACTGGTTCAACTGGTGCTACTTCACC
ATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCGCTGAAAATAATGTAGCTGT
TTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTTCATCTGCATCATCTTCATC
TGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAAC
TGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGC
TGCAACGGTAGCTACAACCACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGC
TACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCA
AGTATCACTACGATGATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCC
CTTTTTTTCTCTATAATTTTTAAATTAAATATAAAATAAATA
sequence update 1998. 6. 7
Translated Amino Acid sequence 
---IASTIASTGSTGATSPCSVAQCPTGYVCVAENNVAVCLPRPTTTTGSTSSSASSSSA
SSAATTAATTIATTAATTTATTTATTATTTATTTATTTAATVATTTAATTTATTTATTAT
TTATTTATS*i*sknifyqvslr**f****yqkmilkipffsl*fln*i*nk
Translated Amino Acid sequence (All Frames) 
Frame A:
---qllllllqlvqlvllhhvpllnvqlvmfvslkim*lfvcqdlplppvahlhlhhlhl
hhlqqlqlqlqlqlqlqlqlqlqpqpqlqpqpqpqlqpqlqr*lqpqlqlqlqlqpqpql
qpqlqpqlplkfnqktffikyhyddnfnnnsikk*y*kspfflynf*ikykin


Frame B:
---ncfyycfnwfnwcyftmfrcsmsnwlclcr*k*csclfaktyhyhr*hificiific
iicsnyscnyncnyscnyncnynrnhsynhshnhsynhscngsynhscnyncnynrnhsy
nhsynhsyllnlikkhflssittmiiliiivskndiknplffsiifklnik*i


Frame C:
---IASTIASTGSTGATSPCSVAQCPTGYVCVAENNVAVCLPRPTTTTGSTSSSASSSSA
SSAATTAATTIATTAATTTATTTATTATTTATTTATTTAATVATTTAATTTATTTATTAT
TTATTTATS*i*sknifyqvslr**f****yqkmilkipffsl*fln*i*nk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE888 (SLE888Q) /CSM/SL/SLE8-D/SLE888Q.Seq.d/                        973   0.0
SLE741 (SLE741Q) /CSM/SL/SLE7-B/SLE741Q.Seq.d/                        932   0.0
SSB820 (SSB820Q) /CSM/SS/SSB8-A/SSB820Q.Seq.d/                        654   0.0
SLH738 (SLH738Q) /CSM/SL/SLH7-B/SLH738Q.Seq.d/                        654   0.0
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        654   0.0
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        654   0.0
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        654   0.0
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/                        654   0.0
SLE435 (SLE435Q) /CSM/SL/SLE4-B/SLE435Q.Seq.d/                        654   0.0
SLE278 (SLE278Q) /CSM/SL/SLE2-D/SLE278Q.Seq.d/                        654   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039641) Dictyostelium discoideum slug cDNA, clone SLE888.      353   e-180  2
(AU039553) Dictyostelium discoideum slug cDNA, clone SLE741.      345   e-170  2
(C25558) Dictyostelium discoideum slug cDNA, clone SLA405.        289   e-164  3
(X16491) Dictyostelium discoideum sp96 gene for spore coat p...   281   e-153  4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...   289   e-152  4
(AU060245) Dictyostelium discoideum slug cDNA, clone SLA681.      281   e-126  5
(AU033785) Dictyostelium discoideum slug cDNA, clone SLB436.      262   e-118  4
(BJ399241) Dictyostelium discoideum cDNA clone:dds5c04, 3' e...   283   e-108  4
(BJ374732) Dictyostelium discoideum cDNA clone:ddc16f04, 3' ...   178   e-104  6
(BJ378871) Dictyostelium discoideum cDNA clone:ddc33h03, 3' ...   289   2e-97  3
dna update 2009. 5. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    61   2e-08
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    57   3e-07
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    34   2.5
Z81540_12(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    33   4.2
Z81540_13(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    32   7.1
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    32   9.3
protein update 2009. 6. 3
PSORT 

 psg: 0.89  gvh: 0.52  alm: 0.44  top: 0.47  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLE888 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE888Z
3' end seq. 
>SLE888Z.Seq
----------TCAATTGCTTCTACTATTGCTTCAACTGGTTCAACTGGTGCTACTTCACC
ATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCGCTGAAAATAATGTAGCTGT
TTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTTCATCTGCATCATCTTCATC
TGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAAC
TGCAACTACAACCGCAACCACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGC
TGCAACGGTAGCTACAACCACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGC
TACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCA
AGTATCACTACGATGATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCC
CTTTTTTTCTCTATAATTTTTAAATTAAATATAAAATAAATA
Length of 3' end seq. 512
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -