SLE875
Library SL
(Link to library)
Clone ID SLE875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15434-1
Original site URL
Representative seq. ID SLE875Z
(Link to Original site)
Representative DNA sequence
>SLE875 (SLE875Q) /CSM/SL/SLE8-D/SLE875Q.Seq.d/
XXXXXXXXXXTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACTGGTCATCCATC
TTTTGTTATGTNAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCCCTCTGGACTAA
AACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAAGTTGC
TCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAATCCGA
ATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAAAATCT
TTTGTTTAATAAATATATAAAACTTTTTTAACA
sequence update 1998. 6. 7
Translated Amino Acid sequence
---AEGRLVNLGCGTGHPSFVMXNSFCNQTLAQIALWTKTEEYPLGVHFLPKILDEEVAR
LHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*nllfnkyiklf*


Translated Amino Acid sequence (All Frames)
Frame A:
---*lkvvssi*vvvlvihlllcxtlsvtkl*lkspsglklknth*vstsyqrf*mkkll
vyi*in*vln*lpslknnpniyqfqslvhtklittdikifclini*nffn


Frame B:
---s*rssrqfrlwywssifcyvklfl*pnfssnrpld*n*ripircplltkdfr*rscs
ftfrsirc*inyph*ktirifisssrwsiqs*slqilksfv**iyktflt


Frame C:
---AEGRLVNLGCGTGHPSFVMXNSFCNQTLAQIALWTKTEEYPLGVHFLPKILDEEVAR
LHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*nllfnkyiklf*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE832 (VSE832Q) /CSM/VS/VSE8-B/VSE832Q.Seq.d/ 634 0.0
VSD736 (VSD736Q) /CSM/VS/VSD7-B/VSD736Q.Seq.d/ 634 0.0
SLK754 (SLK754Q) /CSM/SL/SLK7-C/SLK754Q.Seq.d/ 634 0.0
SLK569 (SLK569Q) /CSM/SL/SLK5-C/SLK569Q.Seq.d/ 634 0.0
SLI719 (SLI719Q) /CSM/SL/SLI7-A/SLI719Q.Seq.d/ 634 0.0
SLI580 (SLI580Q) /CSM/SL/SLI5-D/SLI580Q.Seq.d/ 634 0.0
SLI320 (SLI320Q) /CSM/SL/SLI3-A/SLI320Q.Seq.d/ 634 0.0
SLI307 (SLI307Q) /CSM/SL/SLI3-A/SLI307Q.Seq.d/ 634 0.0
SLI165 (SLI165Q) /CSM/SL/SLI1-C/SLI165Q.Seq.d/ 634 0.0
SLH831 (SLH831Q) /CSM/SL/SLH8-B/SLH831Q.Seq.d/ 634 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU285050) Dictyostelium discoideum gamete cDNA clone:FCL-AC... 634 e-178 1
(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1... 634 e-178 1
(AU284257) Dictyostelium discoideum gamete cDNA clone:FC-AE1... 634 e-178 1
(AU264488) Dictyostelium discoideum vegetative cDNA clone:VS... 634 e-178 1
(AU263412) Dictyostelium discoideum vegetative cDNA clone:VS... 634 e-178 1
(AU054123) Dictyostelium discoideum slug cDNA, clone SLK754. 634 e-178 1
(AU054085) Dictyostelium discoideum slug cDNA, clone SLK569. 634 e-178 1
(AU053472) Dictyostelium discoideum slug cDNA, clone SLI719. 634 e-178 1
(AU053407) Dictyostelium discoideum slug cDNA, clone SLI580. 634 e-178 1
(AU053288) Dictyostelium discoideum slug cDNA, clone SLI320. 634 e-178 1
dna update 2009. 5. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim... 192 4e-48
X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden... 177 1e-43
CP000820_110(CP000820|pid:none) Frankia sp. EAN1pec, complete ge... 150 1e-35
(O13639) RecName: Full=Adenosylhomocysteinase; Short=Ad... 150 1e-35
DQ676850_1(DQ676850|pid:none) Pimephales promelas S-adenosylhomo... 150 1e-35
DQ167408_1(DQ167408|pid:none) Volvariella volvacea S-adenosyl-L-... 149 3e-35
CP000249_4405(CP000249|pid:none) Frankia sp. CcI3, complete geno... 147 9e-35
CP001101_1572(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 147 1e-34
(Q27580) RecName: Full=Adenosylhomocysteinase; Short=Ad... 145 4e-34
CP001097_1577(CP001097|pid:none) Chlorobium limicola DSM 245, co... 145 6e-34
protein update 2009. 6. 3
PSORT

psg: 0.87 gvh: 0.64 alm: 0.52 top: 0.47 tms: 0.00 mit: 0.21 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for SLE875 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE875Z
3' end seq.
>SLE875Z.Seq
----------TTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACTGGTCATCCATC
TTTTGTTATGTNAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCCCTCTGGACTAA
AACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAAGTTGC
TCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAATCCGA
ATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAAAATCT
TTTGTTTAATAAATATATAAAACTTTTTTAACA
Length of 3' end seq. 323
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -