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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE865
Library SL
(Link to library)
Clone ID SLE865
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID SLE865Z
(Link to Original site)
Representative DNA sequence 
>SLE865 (SLE865Q) /CSM/SL/SLE8-C/SLE865Q.Seq.d/
XXXXXXXXXXTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTAT
GAAACTAGACCAATACTTGGAAATGGGTTAGTCTTTAAATGTGCAACTGGAGCCAATTGT
TTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATT
TCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTA
GAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTT
CCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTATCTGGTTATGATGAT
TCAAATAGTGATATTATTAGAGTTCAATCAATTTCACTTTCAAATTAAAAAAAAAAAAAA
AAAA
sequence update 1998. 6. 7
Translated Amino Acid sequence 
---SSASWGPYSKKEVEYYETRPILGNGLVFKCATGANCLSSKGKRTLNINILGFKEIIS
NTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNEFYAITLSGYDDS
NSDIIRVQSISLSN*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lkcklgsifkegg*il*n*tntwkwvsl*mcnwsqlfik*rqknpqhqhfrf*rnhf
kyss*plnqr*knstlnfirtih*fiiy**w*fiqyn*rstskil*k*ilcyysiwl**f
k**yy*ssinftfklkkkkk


Frame B:
---SSASWGPYSKKEVEYYETRPILGNGLVFKCATGANCLSSKGKRTLNINILGFKEIIS
NTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNEFYAITLSGYDDS
NSDIIRVQSISLSN*kkkkk


Frame C:
---qvqvgvhiqrrrlnimkldqylemg*slnvqlepivyqvkakepststf*vlkksfq
ilklts*pkvkkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiemnsmlllylvmmiq
ivillefnqfhfqikkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE865 (SLE865Q) /CSM/SL/SLE8-C/SLE865Q.Seq.d/                        785   0.0
SLH223 (SLH223Q) /CSM/SL/SLH2-A/SLH223Q.Seq.d/                        753   0.0
SLH143 (SLH143Q) /CSM/SL/SLH1-B/SLH143Q.Seq.d/                        753   0.0
SLE641 (SLE641Q) /CSM/SL/SLE6-B/SLE641Q.Seq.d/                        753   0.0
SLG156 (SLG156Q) /CSM/SL/SLG1-C/SLG156Q.Seq.d/                        745   0.0
SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/                        728   0.0
CFJ394 (CFJ394Q) /CSM/CF/CFJ3-D/CFJ394Q.Seq.d/                        708   0.0
CFF669 (CFF669Q) /CSM/CF/CFF6-C/CFF669Q.Seq.d/                        708   0.0
SFK688 (SFK688Q) /CSM/SF/SFK6-D/SFK688Q.Seq.d/                        698   0.0
SFB309 (SFB309Q) /CSM/SF/SFB3-A/SFB309Q.Seq.d/                        698   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039626) Dictyostelium discoideum slug cDNA, clone SLE865.      785   0.0    1
(AU039235) Dictyostelium discoideum slug cDNA, clone SLH223.      753   0.0    1
(AU039206) Dictyostelium discoideum slug cDNA, clone SLH143.      753   0.0    1
(AU034885) Dictyostelium discoideum slug cDNA, clone SLE641.      753   0.0    1
(AU039671) Dictyostelium discoideum slug cDNA, clone SLG156.      745   0.0    1
(BJ372438) Dictyostelium discoideum cDNA clone:ddc12i18, 3' ...   672   0.0    2
(BJ375770) Dictyostelium discoideum cDNA clone:ddc19l23, 3' ...   672   0.0    2
(AU039615) Dictyostelium discoideum slug cDNA, clone SLE843.      424   0.0    2
(BJ401345) Dictyostelium discoideum cDNA clone:dds22o22, 3' ...   672   0.0    2
(BJ376098) Dictyostelium discoideum cDNA clone:ddc21n04, 3' ...   654   0.0    2
dna update 2009. 5. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007213_9(AC007213|pid:none) Arabidopsis thaliana chromosome 2 ...    34   1.4
CP000025_1226(CP000025|pid:none) Campylobacter jejuni RM1221, co...    33   3.1
CP000814_1063(CP000814|pid:none) Campylobacter jejuni subsp. jej...    33   3.1
AM502231_112(AM502231|pid:none) Leishmania infantum chromosome 13.     33   4.0
AF108897_2(AF108897|pid:none) Campylobacter jejuni PglB (pglB) g...    32   5.3
X91081_1(X91081|pid:none) C.hyoilei rfbF and rfbP genes.               32   5.3
AF001498_2(AF001498|pid:none) Campylobacter jejuni polysaccharid...    32   5.3
AM285312_25(AM285312|pid:none) Spiroplasma citri GII3-3X chromos...    32   6.9
AY144490_6(AY144490|pid:none) Salmonella enterica subsp. enteric...    32   9.0
CT005252_119(CT005252|pid:none) Leishmania major strain Friedlin...    32   9.0
protein update 2009. 1.23
PSORT 

 psg: 0.40  gvh: 0.51  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SLE865 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE865Z
3' end seq. 
>SLE865Z.Seq
----------TCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTAT
GAAACTAGACCAATACTTGGAAATGGGTTAGTCTTTAAATGTGCAACTGGAGCCAATTGT
TTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATT
TCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTA
GAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTT
CCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTATCTGGTTATGATGAT
TCAAATAGTGATATTATTAGAGTTCAATCAATTTCACTTTCAAATTAAAAAAAAAAAAAA
AAAA
Length of 3' end seq. 414
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -