NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE859
Library SL
(Link to library)
Clone ID SLE859
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10885-1
Original site URL
Representative seq. ID SLE859Z
(Link to Original site)
Representative DNA sequence 
>SLE859 (SLE859Q) /CSM/SL/SLE8-C/SLE859Q.Seq.d/
XXXXXXXXXXACTGGAACCACTTCAAGTAAACCTTCATCTAGTAGTGGTGGTGTTAGTGG
TGGTGGTATTGGTAGTGAAAGTTCAATCTATGGATTAAGTTCTGAAAACCAAGAAAATCA
AAGTGGACATCATGCTTCTTCAAATACAAATATTTTATTACCAACTACTTTTGTTTTCTT
TATTTCAATTACAATTTTATCATTACTTTTTTAAAATTATTATTATCATTATTATTATTC
GAAAAATAAAAAAAAAAATAAAAAA
sequence update 1998. 6. 7
Translated Amino Acid sequence 
---GTTSSKPSSSSGGVSGGGIGSESSIYGLSSENQENQSGHHASSNTNILLPTTFVFFI
SITILSLLF*nyyyhyyysknkkknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---leplqvnlhlvvvvlvvvvlvvkvqsmd*vlktkkikvdimllqiqifyyqlllfsl
fqlqfyhyffkiiiiiiiirkikkkik


Frame B:
---wnhfk*tfi**wwc*wwwyw**kfnlwikf*kprkskwtscffkykyfitnyfcfly
fnynfiitflklllslllfek*kkk*k


Frame C:
---GTTSSKPSSSSGGVSGGGIGSESSIYGLSSENQENQSGHHASSNTNILLPTTFVFFI
SITILSLLF*nyyyhyyysknkkknkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL122 (SSL122Q) /CSM/SS/SSL1-A/SSL122Q.Seq.d/                        311   3e-84
SSH205 (SSH205Q) /CSM/SS/SSH2-A/SSH205Q.Seq.d/                        311   3e-84
SSH126 (SSH126Q) /CSM/SS/SSH1-B/SSH126Q.Seq.d/                        311   3e-84
SSG547 (SSG547Q) /CSM/SS/SSG5-B/SSG547Q.Seq.d/                        311   3e-84
SSF684 (SSF684Q) /CSM/SS/SSF6-D/SSF684Q.Seq.d/                        311   3e-84
SSF421 (SSF421Q) /CSM/SS/SSF4-A/SSF421Q.Seq.d/                        311   3e-84
SSF145 (SSF145Q) /CSM/SS/SSF1-B/SSF145Q.Seq.d/                        311   3e-84
SSF144 (SSF144Q) /CSM/SS/SSF1-B/SSF144Q.Seq.d/                        311   3e-84
SSB829 (SSB829Q) /CSM/SS/SSB8-B/SSB829Q.Seq.d/                        311   3e-84
SLH350 (SLH350Q) /CSM/SL/SLH3-C/SLH350Q.Seq.d/                        311   3e-84
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073002) Dictyostelium discoideum slug cDNA, clone SSF684.      278   1e-70  1
(AU039623) Dictyostelium discoideum slug cDNA, clone SLE859.      278   1e-70  1
(AU039285) Dictyostelium discoideum slug cDNA, clone SLH350.      278   1e-70  1
(AU038051) Dictyostelium discoideum slug cDNA, clone SSH205.      278   1e-70  1
(AU037986) Dictyostelium discoideum slug cDNA, clone SSH126.      278   1e-70  1
(AU036928) Dictyostelium discoideum slug cDNA, clone SSB829.      278   1e-70  1
(AU034464) Dictyostelium discoideum slug cDNA, clone SLC172.      278   1e-70  1
(AU034008) Dictyostelium discoideum slug cDNA, clone SLB724.      278   1e-70  1
(C94512) Dictyostelium discoideum slug cDNA, clone SSL122.        278   1e-70  1
(C92989) Dictyostelium discoideum slug cDNA, clone SSF421.        278   1e-70  1
dna update 2009. 5. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 168,738,536
protein update 2009. 6. 3
PSORT 

 psg: 0.87  gvh: 0.39  alm: 0.27  top: 0.60  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.50  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLE859 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE859Z
3' end seq. 
>SLE859Z.Seq
----------ACTGGAACCACTTCAAGTAAACCTTCATCTAGTAGTGGTGGTGTTAGTGG
TGGTGGTATTGGTAGTGAAAGTTCAATCTATGGATTAAGTTCTGAAAACCAAGAAAATCA
AAGTGGACATCATGCTTCTTCAAATACAAATATTTTATTACCAACTACTTTTGTTTTCTT
TATTTCAATTACAATTTTATCATTACTTTTTTAAAATTATTATTATCATTATTATTATTC
GAAAAATAAAAAAAAAAATAAAAAA
Length of 3' end seq. 255
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -