>SLE839 (SLE839Q) /CSM/SL/SLE8-B/SLE839Q.Seq.d/
XXXXXXXXXXATAATCATAATAGTAACGAGAAAGATGTTGATATTGAAGATGATCAATCA
TCAAATGGCAATGGAGAAATATCCAGATATAGTCATCGTGATGGTAGCGGACATCATCAT
CATAAACATAGACATCATCACCATAAAAAGAGATCACATAAACATAAAGATAGAAAAGAA
CATAGAATAAAGAAACAAAGAACTAAAGTATCTGATCTTCCAATGAATGTACATGATTCT
GATCAAGAAACCGAGGATTCTGGTCCAGATGAACAAGCAAATTCAATCAACATCAAAGAT
GACAAAGATCGTCTCTATTGTGTTTGCCAGAAAAAATATGATAAAACTAAATTTATGATT
GCTTGTGATCGTTGTGATGAGTGGTATCATGGGGATTGTGTATATATTTCAGAAAAGGAT
GCAAAAAGAATTAAATCTTATGTTTGTGCAAATTGTATTAAAAAGAAAGAAAAAGAACGT
AATGAAAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAGAGAAAAA
GAAAGAGAAAGAGAAAAAGAAAGAGAAAAACAAAAACGTG

---NHNSNEKDVDIEDDQSSNGNGEISRYSHRDGSGHHHHKHRHHHHKKRSHKHKDRKEH
RIKKQRTKVSDLPMNVHDSDQETEDSGPDEQANSINIKDDKDRLYCVCQKKYDKTKFMIA
CDRCDEWYHGDCVYISEKDAKRIKSYVCANCIKKKEKERNEREKEKEKEKEKEKEKREKE
REREKEREKQKR

Frame A:
---*s***rerc*y*r*siikwqwrniqi*ss*w*rtsss*t*tssp*keit*t*r*krt
*nketkn*si*ssnect*f*srnrgfwsr*tskfnqhqr*qrssllclpeki**n*iydc
l*sl**vvswglciyfrkgckkn*ilclckly*kerkrt**krkrkrkrkrkrkrkkrkr
krkrkrkrktkt


Frame B:
---NHNSNEKDVDIEDDQSSNGNGEISRYSHRDGSGHHHHKHRHHHHKKRSHKHKDRKEH
RIKKQRTKVSDLPMNVHDSDQETEDSGPDEQANSINIKDDKDRLYCVCQKKYDKTKFMIA
CDRCDEWYHGDCVYISEKDAKRIKSYVCANCIKKKEKERNEREKEKEKEKEKEKEKREKE
REREKEREKQKR


Frame C:
---iiivtrkmlilkminhqmamekypdivivmvadiiiinidiitikrdhinikiekni
e*rnkelkylifq*mymilikkprilvqmnkqiqstskmtkivsivfarknmiklnl*ll
vivvmsgimgivyifqkrmqkelnlmfvqivlkrkkknvmkekkkkkkkkkkkkkkekkk
ekekkkeknknv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE839 (SLE839Q) /CSM/SL/SLE8-B/SLE839Q.Seq.d/                        890   0.0
SLF320 (SLF320Q) /CSM/SL/SLF3-A/SLF320Q.Seq.d/                        868   0.0
SLI438 (SLI438Q) /CSM/SL/SLI4-B/SLI438Q.Seq.d/                        773   0.0
SLC617 (SLC617Q) /CSM/SL/SLC6-A/SLC617Q.Seq.d/                        525   e-148
SLA528 (SLA528Q) /CSM/SL/SLA5-B/SLA528Q.Seq.d/                        266   3e-70
SLK306 (SLK306Q) /CSM/SL/SLK3-A/SLK306Q.Seq.d/                        139   5e-32
SLF661 (SLF661Q) /CSM/SL/SLF6-C/SLF661Q.Seq.d/                         70   4e-11
SHL892 (SHL892Q) /CSM/SH/SHL8-D/SHL892Q.Seq.d/                         36   0.57
SHL677 (SHL677Q) /CSM/SH/SHL6-D/SHL677Q.Seq.d/                         36   0.57
FC-AA01 (FC-AA01Q) /CSM/FC/FC-AA/FC-AA01Q.Seq.d/                       36   0.57

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039612) Dictyostelium discoideum slug cDNA, clone SLE839.      400   e-159  2
(AU052918) Dictyostelium discoideum slug cDNA, clone SLF320.      400   e-152  2
(AU053350) Dictyostelium discoideum slug cDNA, clone SLI438.      400   e-129  2
(AU034609) Dictyostelium discoideum slug cDNA, clone SLC617.      387   e-103  1
(AU060181) Dictyostelium discoideum slug cDNA, clone SLA528.      198   2e-46  1
(AU061748) Dictyostelium discoideum slug cDNA, clone SLF661.       70   1e-07  1
(AU053964) Dictyostelium discoideum slug cDNA, clone SLK306.       62   2e-05  1
(CD064120) MA1-0037P-V036-E06-U.B MA1-0037 Schistosoma manso...    50   0.095  1
(AM466286) Vitis vinifera contig VV78X051424.9, whole genome...    46   1.5    1
(AM455904) Vitis vinifera, whole genome shotgun sequence, co...    46   1.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC160926_1(BC160926|pid:none) Rattus norvegicus fetal Alzheimer ...    78   2e-13
BC128800_1(BC128800|pid:none) Danio rerio zgc:158157, mRNA (cDNA...    74   2e-12
BC085577_1(BC085577|pid:none) Danio rerio zgc:158157, mRNA (cDNA...    74   2e-12
(Q9W0T1) RecName: Full=Nucleosome-remodeling factor subunit NURF...    74   3e-12
AE014296_66(AE014296|pid:none) Drosophila melanogaster chromosom...    74   3e-12
AF417921_1(AF417921|pid:none) Drosophila melanogaster nucleosome...    74   3e-12
AL596116_1(AL596116|pid:none) Mouse DNA sequence from clone RP23...    72   1e-11
AL596116_2(AL596116|pid:none) Mouse DNA sequence from clone RP23...    72   1e-11
BC021489_1(BC021489|pid:none) Mus musculus fetal Alzheimer antig...    72   1e-11
AK165902_1(AK165902|pid:none) Mus musculus lung RCB-0558 LLC cDN...    72   1e-11

 psg: 0.75  gvh: 0.13  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.48  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SLE839 is nuc

>SLE839Z.Seq
----------ATAATCATAATAGTAACGAGAAAGATGTTGATATTGAAGATGATCAATCA
TCAAATGGCAATGGAGAAATATCCAGATATAGTCATCGTGATGGTAGCGGACATCATCAT
CATAAACATAGACATCATCACCATAAAAAGAGATCACATAAACATAAAGATAGAAAAGAA
CATAGAATAAAGAAACAAAGAACTAAAGTATCTGATCTTCCAATGAATGTACATGATTCT
GATCAAGAAACCGAGGATTCTGGTCCAGATGAACAAGCAAATTCAATCAACATCAAAGAT
GACAAAGATCGTCTCTATTGTGTTTGCCAGAAAAAATATGATAAAACTAAATTTATGATT
GCTTGTGATCGTTGTGATGAGTGGTATCATGGGGATTGTGTATATATTTCAGAAAAGGAT
GCAAAAAGAATTAAATCTTATGTTTGTGCAAATTGTATTAAAAAGAAAGAAAAAGAACGT
AATGAAAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAGAGAAAAA
GAAAGAGAAAGAGAAAAAGAAAGAGAAAAACAAAAACGTG