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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE833
Library SL
(Link to library)
Clone ID SLE833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SLE833E
(Link to Original site)
Representative DNA sequence 
>SLE833 (SLE833Q) /CSM/SL/SLE8-B/SLE833Q.Seq.d/
GTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGT
AAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCT
AATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACA
TAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGT
CTTATTTTCATAAAAATGCGCCTCAAATATATAATGTACAAAAAAAA
sequence update 1998. 6. 4
Translated Amino Acid sequence 
llqvll*lvllf*VLLYLRVRKVMMLGKQVKEMLWQLHKLIHYILNQVMEVKIHSITHQH
KSKNLIYKIMYCFNFNFFPVLFS*kcasni*ctkk
Translated Amino Acid sequence (All Frames) 
Frame A:
viasvvvvgavvlgaaifagkkgydawktsqgnvmaasqanplytqssnggenplynspt
*iqkpnl*nhvlf*f*ffsslifikmrlkyimykk


Frame B:
llqvll*lvllf*VLLYLRVRKVMMLGKQVKEMLWQLHKLIHYILNQVMEVKIHSITHQH
KSKNLIYKIMYCFNFNFFPVLFS*kcasni*ctkk


Frame C:
yckcccswcccfrccyicg*erl*clenksrkcygsfts*siiysik*wr*kstl*ltni
npkt*fikscivliliffqsyfhknapqiynvqkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG856 (SSG856Q) /CSM/SS/SSG8-C/SSG856Q.Seq.d/                        428   e-119
SSG816 (SSG816Q) /CSM/SS/SSG8-A/SSG816Q.Seq.d/                        428   e-119
SLI603 (SLI603Q) /CSM/SL/SLI6-A/SLI603Q.Seq.d/                        428   e-119
SLI537 (SLI537Q) /CSM/SL/SLI5-B/SLI537Q.Seq.d/                        428   e-119
SLH222 (SLH222Q) /CSM/SL/SLH2-A/SLH222Q.Seq.d/                        428   e-119
SLG730 (SLG730Q) /CSM/SL/SLG7-B/SLG730Q.Seq.d/                        428   e-119
SLF603 (SLF603Q) /CSM/SL/SLF6-A/SLF603Q.Seq.d/                        428   e-119
SLF233 (SLF233Q) /CSM/SL/SLF2-B/SLF233Q.Seq.d/                        428   e-119
SLF208 (SLF208Q) /CSM/SL/SLF2-A/SLF208Q.Seq.d/                        428   e-119
SLE833 (SLE833Q) /CSM/SL/SLE8-B/SLE833Q.Seq.d/                        428   e-119
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU035014) Dictyostelium discoideum slug cDNA, clone SLE492.      428   e-136  2
(AU033641) Dictyostelium discoideum slug cDNA, clone SLB259.      428   e-136  2
(C89992) Dictyostelium discoideum slug cDNA, clone SSG816.        428   e-136  2
(AU034728) Dictyostelium discoideum slug cDNA, clone SLE246.      428   e-136  2
(AU033790) Dictyostelium discoideum slug cDNA, clone SLB442.      428   e-136  2
(AU052850) Dictyostelium discoideum slug cDNA, clone SLF208.      428   e-136  2
(AU052483) Dictyostelium discoideum slug cDNA, clone SLD406.      428   e-136  2
(AU034204) Dictyostelium discoideum slug cDNA, clone SLC255.      428   e-136  2
(AU034947) Dictyostelium discoideum slug cDNA, clone SLE383.      428   e-136  2
(AU039912) Dictyostelium discoideum slug cDNA, clone SLG730.      428   e-136  2
dna update 2009. 5. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 88   1e-16
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 50   3e-05
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    47   3e-04
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    46   5e-04
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 45   6e-04
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    44   0.002
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 43   0.004
EF494740_11(EF494740|pid:none) Blastocystis sp. NandII mitochond...    32   5.3
(Q54JA3) RecName: Full=Integrin beta-like protein E; Flags: Prec...    32   7.0
protein update 2009. 3. 4
PSORT 

 psg: 0.78  gvh: 0.34  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SLE833 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE833E
Full length Seq. 
>SLE833E.Seq
GTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGT
AAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCT
AATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACA
TAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGT
CTTATTTTCATAAAAATGCGCCTCAAATATATAATGTACAAAAAAAA
Length of full length seq. 287