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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE810
Library SL
(Link to library)
Clone ID SLE810
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SLE810P
(Link to Original site)
Representative DNA sequence 
>SLE810 (SLE810Q) /CSM/SL/SLE8-A/SLE810Q.Seq.d/
AATCCAGGCTCATTATGTCGTAATGTAACTTGTCCATAATGNCTATGTTTGCAAGGCAAT
TAATAATCTTCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTT
ACATTGCCCATCTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGA
AACCCATCCAGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGC
AATGGTTCCTAATAAATGTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTG
TCGTTTACCATCAAATTCTAATGAAGATTATAATAATAAACCTAATGGATATAATGATAA
TXXXXXXXXXXTATGATGATGAGCCTAATGGATATGATGATAATGAAAATGAGGGTGATG
GATTATCAATTCCATGTGGCCCAATTATNACTTGTTAATTAAATTAAATTTGTTTATTAG
TACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTG
TTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCTTTTTAAATTT
AAATAAAAAAAAAATATATATTTTCATTTTTCAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
iqahyvvm*LVHNXYVCKAINNLPTCIRNPLPPNYPCRDLHCPSGYSCEIINDLPSCVRE
THPGHCKTCHDVNCGSLDCAMVPNKCPRGSRDCCIQIPSCRLPSNSNEDYNNKPNGYNDN
---

---MMMSLMDMMIMKMRVMDYQFHVAQLXLVN*ikfvy*ynhvvphyvnl*nvhqelnvl
liqlefqfvyqme*llfkfk*kkniyfhfs
Translated Amino Acid sequence (All Frames) 
Frame A:
npgslcrnvtcp*xlclqgn**ssnmys*sittklpm*rftlpiwillrnhq*spimrkr
npsrsl*nls*c*lwfiglrngs**mskrfs*llysnsivsftikf**rl***t*wi***
---

---yddepngyddnenegdglsipcgpixtc*ln*icllvqsrcaplcefvkcspgtkcv
adttgipvclpngitpf*i*ikkkyifsff

Frame B:
iqahyvvm*LVHNXYVCKAINNLPTCIRNPLPPNYPCRDLHCPSGYSCEIINDLPSCVRE
THPGHCKTCHDVNCGSLDCAMVPNKCPRGSRDCCIQIPSCRLPSNSNEDYNNKPNGYNDN
---

---MMMSLMDMMIMKMRVMDYQFHVAQLXLVN*ikfvy*ynhvvphyvnl*nvhqelnvl
liqlefqfvyqme*llfkfk*kkniyfhfs

Frame C:
srlims*cnlsimxmfarqliifqhvfvihyhqtthveiyiahldtlakssmishha*ek
piqvivklvmmlivvhwiaqwflinvqevlvtavfkfhrvvyhqilmkiiiinlmdimi-
--

---***a*wi****k*g*wiinsmwpnyxlliklnlfistitlcpim*ickmftrn*mcc
*ynwnsslftkwnnsflnlnkkkiyififq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE810 (SLE810Q) /CSM/SL/SLE8-A/SLE810Q.Seq.d/                       1126   0.0
SLH875 (SLH875Q) /CSM/SL/SLH8-D/SLH875Q.Seq.d/                        654   0.0
SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/                        654   0.0
SLB496 (SLB496Q) /CSM/SL/SLB4-D/SLB496Q.Seq.d/                        654   0.0
SLA763 (SLA763Q) /CSM/SL/SLA7-C/SLA763Q.Seq.d/                        654   0.0
SFJ163 (SFJ163Q) /CSM/SF/SFJ1-C/SFJ163Q.Seq.d/                        654   0.0
SFG405 (SFG405Q) /CSM/SF/SFG4-A/SFG405Q.Seq.d/                        654   0.0
CFG712 (CFG712Q) /CSM/CF/CFG7-A/CFG712Q.Seq.d/                        654   0.0
AFO872 (AFO872Q) /CSM/AF/AFO8-C/AFO872Q.Seq.d/                        654   0.0
AFO577 (AFO577Q) /CSM/AF/AFO5-D/AFO577Q.Seq.d/                        654   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   1e-04  15
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  38   4e-04  11
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    34   0.001  10
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    40   0.001  11
BX248395|BX248395.9 Zebrafish DNA sequence from clone CH211-213A13 in linkage group 22.    40   0.003  5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   0.003  14
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    36   0.003  13
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            32   0.006  21
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.007  17
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    40   0.008  11
dna update 2004. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   224   5e-99
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    73   8e-12
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    73   8e-12
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        59   1e-07
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    59   1e-07
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    58   2e-07
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    49   9e-05
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 43   0.006
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 41   0.025
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    40   0.055
protein update 2009. 6. 3
PSORT 

 psg: 0.78  gvh: 0.33  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SLE810 is mit
5' end seq. ID SLE810F
5' end seq. 
>SLE810F.Seq
AATCCAGGCTCATTATGTCGTAATGTAACTTGTCCATAATGNCTATGTTTGCAAGGCAAT
TAATAATCTTCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTT
ACATTGCCCATCTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGA
AACCCATCCAGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGC
AATGGTTCCTAATAAATGTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTG
TCGTTTACCATCAAATTCTAATGAAGATTATAATAATAAACCTAATGGATATAATGATAA
T----------
Length of 5' end seq. 361
3' end seq. ID SLE810Z
3' end seq. 
>SLE810Z.Seq
----------TATGATGATGAGCCTAATGGATATGATGATAATGAAAATGAGGGTGATGG
ATTATCAATTCCATGTGGCCCAATTATNACTTGTTAATTAAATTAAATTTGTTTATTAGT
ACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTGT
TGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCTTTTTAAATTTA
AATAAAAAAAAAATATATATTTTCATTTTTCAA
Length of 3' end seq. 263
Connected seq. ID SLE810P
Connected seq. 
>SLE810P.Seq
AATCCAGGCTCATTATGTCGTAATGTAACTTGTCCATAATGNCTATGTTTGCAAGGCAAT
TAATAATCTTCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTT
ACATTGCCCATCTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGA
AACCCATCCAGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGC
AATGGTTCCTAATAAATGTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTG
TCGTTTACCATCAAATTCTAATGAAGATTATAATAATAAACCTAATGGATATAATGATAA
T----------TATGATGATGAGCCTAATGGATATGATGATAATGAAAATGAGGGTGATG
GATTATCAATTCCATGTGGCCCAATTATNACTTGTTAATTAAATTAAATTTGTTTATTAG
TACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAACTAAATGTG
TTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCTTTTTAAATTT
AAATAAAAAAAAAATATATATTTTCATTTTTCAA
Length of connected seq. 624
Full length Seq ID -
Full length Seq. -
Length of full length seq. -