SLE786
Library SL
(Link to library)
Clone ID SLE786
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15527-1
Original site URL
Representative seq. ID SLE786Z
(Link to Original site)
Representative DNA sequence
>SLE786 (SLE786Q) /CSM/SL/SLE7-D/SLE786Q.Seq.d/
XXXXXXXXXXTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTATTATTAATTTAAATAAAAGTAAAATCTGTTGGTGTATTCATTG
TTTTGGTTATTTTCATGTTCAATTTGATCCATATCGAATTGATGAATATCATTTTTTAAG
TTGGATTGTTGGTAATGATGTTGTTGATTTTGGAATTGTTGTTGATGAGGTTGTTGAGTT
TGTTGTTGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGAGGTTGATGTTGTTGA
GGTTGTTGGGGTTGTTGTTGTTGTTGATGTAATTGATGATGAAAATTGCTATACA
sequence update 1998. 6. 1
Translated Amino Acid sequence
---FFFFFFFFFFFFFFFFFFFFFIINLNKSKICWCIHCFGYFHVQFDPYRIDEYHFLSW
IVGNDVVDFGIVVDEVVEFVVVVVVVVVVVVVVEVDVVEVVGVVVVVDVIDDENCYT


Translated Amino Acid sequence (All Frames)
Frame A:
---fffffffffffffffffffffllli*ikvksvgvfivlvifmfnlihielmniif*v
gllvmmllilelllmrllslllll*lllllllllrlmllrllglllllm*lmmkiai


Frame B:
---fffffffffffffffffffffyy*fk*k*nllvyslfwlfscsi*sisn**isffkl
dcw**cc*fwncc**gc*vcccccscccccccc*g*cc*gcwgcccc*cn***klly


Frame C:
---FFFFFFFFFFFFFFFFFFFFFIINLNKSKICWCIHCFGYFHVQFDPYRIDEYHFLSW
IVGNDVVDFGIVVDEVVEFVVVVVVVVVVVVVVEVDVVEVVGVVVVVDVIDDENCYT


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE786 (SLE786Q) /CSM/SL/SLE7-D/SLE786Q.Seq.d/ 204 6e-52
CHF820 (CHF820Q) /CSM/CH/CHF8-A/CHF820Q.Seq.d/ 40 0.022
SSI152 (SSI152Q) /CSM/SS/SSI1-C/SSI152Q.Seq.d/ 38 0.087
SSF137 (SSF137Q) /CSM/SS/SSF1-B/SSF137Q.Seq.d/ 38 0.087
SFI259 (SFI259Q) /CSM/SF/SFI2-C/SFI259Q.Seq.d/ 38 0.087
SFD889 (SFD889Q) /CSM/SF/SFD8-D/SFD889Q.Seq.d/ 38 0.087
CHB422 (CHB422Q) /CSM/CH/CHB4-A/CHB422Q.Seq.d/ 38 0.087
CFJ103 (CFJ103Q) /CSM/CF/CFJ1-A/CFJ103Q.Seq.d/ 38 0.087
CFD433 (CFD433Q) /CSM/CF/CFD4-B/CFD433Q.Seq.d/ 38 0.087
SSB113 (SSB113Q) /CSM/SS/SSB1-A/SSB113Q.Seq.d/ 36 0.34

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH616603|BH616603.1 BMBAC309C06T7_PSU Brugia malayi Genomic Bac Library 3 Brugia malayigenomic, genomic survey sequence. 46 0.35 1
AL935047|AL935047.12 Zebrafish DNA sequence from clone DKEY-20L10. 40 0.61 3
AC108569|AC108569.4 Rattus norvegicus clone CH230-160L7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 38 0.68 3
AX345760|AX345760.1 Sequence 831 from Patent WO0200928. 36 0.71 3
AP003359|AP003359.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 2/9. 36 0.72 6
AL954734|AL954734.13 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 40 0.74 3
AP003130|AP003130.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 2/10. 36 0.91 5
AL354835|AL354835.8 Human DNA sequence from clone RP11-164B1 on chromosome 13q31.1-32.3. 38 0.92 4
AC011828|AC011828.3 Homo sapiens chromosome 17 clone RP11-61G23 map 17, WORKING DRAFT SEQUENCE, 31 unordered pieces. 44 0.97 2
BX927067|BX927067.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 40 1.1 2
dna update 2004. 6. 1
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 217,735,617
protein update 2009. 6. 3
PSORT

psg: 1.06 gvh: 0.45 alm: 0.03 top: 0.67 tms: 0.27 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

40.0 %: plasma membrane
28.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: Golgi
4.0 %: cytoplasmic
4.0 %: nuclear

>> prediction for SLE786 is pla

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE786Z
3' end seq.
>SLE786Z.Seq
----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTATTATTAATTTAAATAAAAGTAAAATCTGTTGGTGTATTCATTG
TTTTGGTTATTTTCATGTTCAATTTGATCCATATCGAATTGATGAATATCATTTTTTAAG
TTGGATTGTTGGTAATGATGTTGTTGATTTTGGAATTGTTGTTGATGAGGTTGTTGAGTT
TGTTGTTGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGAGGTTGATGTTGTTGA
GGTTGTTGGGGTTGTTGTTGTTGTTGATGTAATTGATGATGAAAATTGCTATACA
Length of 3' end seq. 345
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -