SLE757
Library SL
(Link to library)
Clone ID SLE757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13482-1
Original site URL
Representative seq. ID SLE757P
(Link to Original site)
Representative DNA sequence
>SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/
CAGATCAGCAAGACTCATTTCAAATATTAAATTTGGACAAAAAAATATTAGACAATTCTC
AACCAATACAAATTGGTGGGCAAATGTTCAAAAGGGACCAGAAGATCCAATTTTAGGTGT
TAGCATTGCTTACAATAAAGATACCTCACCATCAAAGATCAATTTAGGTGTTGGTGCATA
CAGAGATGAAAATGGTAAACCATACGTATTGGATTGCGTAAAGAAAGCAGACAAAAAGAT
CTATGAAGCCAACGTCGATCACGAATACGCACCAATTGTTGGTGTTGCAGCATTCAATCA
ATTGGCAGCACAATTAGCATTGGGTGAAGAGTGTAAACATATTAAAGAGAAACGTATTGC
CACCGTTCAATCGATTTCAGGTACTGGTGCTTTAAGAATTGCCGCTGATTTCTTTGCCCG
TTTCCTCAAGGGTAAAACCGCATACGTACCAAACCCAACATGGGGTAACCATAATGTTAT
TTTCAACGATGCAGGCATTCCAGTCAAATCCTACGGTTACTACAATCCAGCCACTTGTGG
ATTAAACTTTGAAGCCATGACAAAGGATATCGCTGCCGCTCCAGAGGGTTCAATCATTTX
XXXXXXXXXACATGCATGTGCTCACAATCCAACCGGTGTCGATCCAACCGCTGAGCAATG
GAAAAAGATCTCTGAAATCTGTAAAGAGCGTGGTCATTTTGTTCTCTTTGATTTCGCTTA
TCAAGGTTTCGCATCTGGTAGCCCAGAAAAGGATGCTGCCGCTGTCCGTATGTTTGTCGA
AGATGGTCACAACATTGCTCTCTGTCAATCATTTGCTAAAAACTTTGGTCTCTATGGTGA
ACGTATTGGTGCTTTCTCCATTCTCACTGAAACTTCAGATCAAGCTCTCAACGTTGAATC
TCAATTAAAGATCTTAATTCGTCCAATGTACTCTAATCCACCAGTTTATGGAGCTCGTCT
CGTTCAAGCTATCCTCAAAGATAAAGAATTAACCAATGAATGGAGATCCGAAGTTAAAGG
TATGGCCGATCGTATCATTAACATGAGAGAACAATTAGTCAAATACCTTAAAAAACATGG
TTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGGTTT
AACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTATTTAACTCGTAATGG
TCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATCTCGCTAAAGCAATGGC
TGCCGTTACAAAAGATAATTAA
sequence update 1999. 2.19
Translated Amino Acid sequence
RSARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAY
RDENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIA
TVQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCG
LNFEAMTKDIAAAPEGSII---

---HACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGFASGSPEKDAAAVRMFVE
DGHNIALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPVYGARL
VQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMFCFTGL
TPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAMAAVTKDN*


Translated Amino Acid sequence (All Frames)
Frame A:
qiskthfky*iwtkky*tilnqyklvgkcskgtrrsnfrc*hclq*ryltikdqfrcwci
qr*kw*tiriglrkesrqkdl*sqrrsrirtncwccsiqsigstisig*rv*ty*retyc
hrsidfrywcfkncr*flcpfpqg*nrirtkpnmg*p*cyfqrcrhssqilrllqsshlw
ikl*shdkgyrcrsrgfnh---

---tcmcsqsnrcrsnr*amekdl*nl*rawsfcsl*frlsrfriw*prkgccrcpyvcr
rwsqhcslsiic*klwslw*tywcflhsh*nfrsssqr*isikdlnssnvl*stslwsss
rssypqr*rinq*meirs*rygrsyh*hertisqip*ktwfns*lvsyyhsnwyvlfhwf
nsrts*sfgk*ishlfns*wsylncwy*fnkc*isr*sngcrykr*l

Frame B:
RSARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAY
RDENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIA
TVQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCG
LNFEAMTKDIAAAPEGSII---

---HACAHNPTGVDPTAEQWKKISEICKERGHFVLFDFAYQGFASGSPEKDAAAVRMFVE
DGHNIALCQSFAKNFGLYGERIGAFSILTETSDQALNVESQLKILIRPMYSNPPVYGARL
VQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMFCFTGL
TPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAMAAVTKDN*

Frame C:
dqqdsfqilnldkkildnsqpiqiggqmfkrdqkiqf*vlalltikiphhqrsi*vlvht
emkmvnhtywia*rkqtkrsmkptsitnthqllvlqhsinwqhn*hwvksvnilkrnvlp
pfnrfqvlvl*elplislpvssrvkphtyqtqhgvtimlfstmqafqsnptvttiqplvd
*tlkp*qrislplqrvqsf---

---mhvltiqpvsiqplsngkrslksvksvvilfslislikvshlvaqkrmlplsvclsk
mvttllsvnhllktlvsmvnvlvlspfslklqiklstlnln*rs*fvqctlihqfmelvs
fklsskikn*pmngdpklkvwpivslt*enn*sntlknmvqlviglilplklvcfvslv*
lqnklivwqmnitsi*lvmvvsqllvliqqmlnislkqwlplqkii

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/ 2440 0.0
SFH219 (SFH219Q) /CSM/SF/SFH2-A/SFH219Q.Seq.d/ 1378 0.0
AFM850 (AFM850Q) /CSM/AF/AFM8-C/AFM850Q.Seq.d/ 1338 0.0
SLB133 (SLB133Q) /CSM/SL/SLB1-B/SLB133Q.Seq.d/ 1332 0.0
AFM514 (AFM514Q) /CSM/AF/AFM5-A/AFM514Q.Seq.d/ 1310 0.0
SFE417 (SFE417Q) /CSM/SF/SFE4-A/SFE417Q.Seq.d/ 1300 0.0
SFI739 (SFI739Q) /CSM/SF/SFI7-B/SFI739Q.Seq.d/ 1298 0.0
VFJ338 (VFJ338Q) /CSM/VF/VFJ3-B/VFJ338Q.Seq.d/ 1296 0.0
AFM425 (AFM425Q) /CSM/AF/AFM4-B/AFM425Q.Seq.d/ 1292 0.0
AFN637 (AFN637Q) /CSM/AF/AFN6-B/AFN637Q.Seq.d/ 1291 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CN555490|CN555490.1 tae13d09.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to SW:AATM_RAT P00507 ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 46 6e-14 4
AL034352|AL034352.1 S.pombe chromosome II cosmid c725. 50 3e-12 4
AF003140|AF003140.2 Caenorhabditis elegans cosmid C44E4. 62 9e-11 6
AC006710|AC006710.1 Caenorhabditis elegans clone Y119C1AA, WORKING DRAFT SEQUENCE, 1 unordered pieces. 62 3e-09 9
CF012957|CF012957.1 QBK20g06.xg QBK Zea mays cDNA clone QBK20g06, mRNA sequence. 46 8e-09 3
M92660|M92660.1 Daucus carota aspartate aminotransferase (cytoplasmic isoform) mRNA, complete cds. 70 1e-08 3
CD433414|CD433414.1 EL01N0308C03.b Endosperm_3 Zea mays cDNA, mRNA sequence. 46 1e-08 3
CN555163|CN555163.1 tae13d09.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to SW:AATM_RAT P00507 ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 46 1e-08 4
CD438103|CD438103.1 EL01N0509D06.b Endosperm_5 Zea mays cDNA, mRNA sequence. 46 1e-08 3
CN556096|CN556096.1 tae24f08.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to SW:AATM_RAT P00507 ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 46 1e-08 4
dna update 2004. 6. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55F21) RecName: Full=Aspartate aminotransferase, mitochondrial... 836 0.0
(P00505) RecName: Full=Aspartate aminotransferase, mitochondrial... 483 e-135
(Q4R559) RecName: Full=Aspartate aminotransferase, mitochondrial... 481 e-134
CR860094_1(CR860094|pid:none) Pongo abelii mRNA; cDNA DKFZp469B0... 480 e-134
BC054684_1(BC054684|pid:none) Danio rerio glutamic-oxaloacetic t... 478 e-133
AK290847_1(AK290847|pid:none) Homo sapiens cDNA FLJ78439 complet... 477 e-133
BT075809_1(BT075809|pid:none) Caligus rogercresseyi clone crog-e... 474 e-132
U82470_1(U82470|pid:none) Mus musculus aspartate aminotransferas... 474 e-132
(P05202) RecName: Full=Aspartate aminotransferase, mitochondrial... 474 e-132
(P12344) RecName: Full=Aspartate aminotransferase, mitochondrial... 474 e-132
protein update 2009. 6. 3
PSORT

psg: 0.48 gvh: 0.26 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
32.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SLE757 is mit

5' end seq. ID SLE757F
5' end seq.
>SLE757F.Seq
CAGATCAGCAAGACTCATTTCAAATATTAAATTTGGACAAAAAAATATTAGACAATTCTC
AACCAATACAAATTGGTGGGCAAATGTTCAAAAGGGACCAGAAGATCCAATTTTAGGTGT
TAGCATTGCTTACAATAAAGATACCTCACCATCAAAGATCAATTTAGGTGTTGGTGCATA
CAGAGATGAAAATGGTAAACCATACGTATTGGATTGCGTAAAGAAAGCAGACAAAAAGAT
CTATGAAGCCAACGTCGATCACGAATACGCACCAATTGTTGGTGTTGCAGCATTCAATCA
ATTGGCAGCACAATTAGCATTGGGTGAAGAGTGTAAACATATTAAAGAGAAACGTATTGC
CACCGTTCAATCGATTTCAGGTACTGGTGCTTTAAGAATTGCCGCTGATTTCTTTGCCCG
TTTCCTCAAGGGTAAAACCGCATACGTACCAAACCCAACATGGGGTAACCATAATGTTAT
TTTCAACGATGCAGGCATTCCAGTCAAATCCTACGGTTACTACAATCCAGCCACTTGTGG
ATTAAACTTTGAAGCCATGACAAAGGATATCGCTGCCGCTCCAGAGGGTTCAATCATTT-
---------
Length of 5' end seq. 599
3' end seq. ID SLE757Z
3' end seq.
>SLE757Z.Seq
----------ACATGCATGTGCTCACAATCCAACCGGTGTCGATCCAACCGCTGAGCAAT
GGAAAAAGATCTCTGAAATCTGTAAAGAGCGTGGTCATTTTGTTCTCTTTGATTTCGCTT
ATCAAGGTTTCGCATCTGGTAGCCCAGAAAAGGATGCTGCCGCTGTCCGTATGTTTGTCG
AAGATGGTCACAACATTGCTCTCTGTCAATCATTTGCTAAAAACTTTGGTCTCTATGGTG
AACGTATTGGTGCTTTCTCCATTCTCACTGAAACTTCAGATCAAGCTCTCAACGTTGAAT
CTCAATTAAAGATCTTAATTCGTCCAATGTACTCTAATCCACCAGTTTATGGAGCTCGTC
TCGTTCAAGCTATCCTCAAAGATAAAGAATTAACCAATGAATGGAGATCCGAAGTTAAAG
GTATGGCCGATCGTATCATTAACATGAGAGAACAATTAGTCAAATACCTTAAAAAACATG
GTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGGTT
TAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTATTTAACTCGTAATG
GTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATCTCGCTAAAGCAATGG
CTGCCGTTACAAAAGATAATTAA
Length of 3' end seq. 673
Connected seq. ID SLE757P
Connected seq.
>SLE757P.Seq
CAGATCAGCAAGACTCATTTCAAATATTAAATTTGGACAAAAAAATATTAGACAATTCTC
AACCAATACAAATTGGTGGGCAAATGTTCAAAAGGGACCAGAAGATCCAATTTTAGGTGT
TAGCATTGCTTACAATAAAGATACCTCACCATCAAAGATCAATTTAGGTGTTGGTGCATA
CAGAGATGAAAATGGTAAACCATACGTATTGGATTGCGTAAAGAAAGCAGACAAAAAGAT
CTATGAAGCCAACGTCGATCACGAATACGCACCAATTGTTGGTGTTGCAGCATTCAATCA
ATTGGCAGCACAATTAGCATTGGGTGAAGAGTGTAAACATATTAAAGAGAAACGTATTGC
CACCGTTCAATCGATTTCAGGTACTGGTGCTTTAAGAATTGCCGCTGATTTCTTTGCCCG
TTTCCTCAAGGGTAAAACCGCATACGTACCAAACCCAACATGGGGTAACCATAATGTTAT
TTTCAACGATGCAGGCATTCCAGTCAAATCCTACGGTTACTACAATCCAGCCACTTGTGG
ATTAAACTTTGAAGCCATGACAAAGGATATCGCTGCCGCTCCAGAGGGTTCAATCATTT-
---------ACATGCATGTGCTCACAATCCAACCGGTGTCGATCCAACCGCTGAGCAATG
GAAAAAGATCTCTGAAATCTGTAAAGAGCGTGGTCATTTTGTTCTCTTTGATTTCGCTTA
TCAAGGTTTCGCATCTGGTAGCCCAGAAAAGGATGCTGCCGCTGTCCGTATGTTTGTCGA
AGATGGTCACAACATTGCTCTCTGTCAATCATTTGCTAAAAACTTTGGTCTCTATGGTGA
ACGTATTGGTGCTTTCTCCATTCTCACTGAAACTTCAGATCAAGCTCTCAACGTTGAATC
TCAATTAAAGATCTTAATTCGTCCAATGTACTCTAATCCACCAGTTTATGGAGCTCGTCT
CGTTCAAGCTATCCTCAAAGATAAAGAATTAACCAATGAATGGAGATCCGAAGTTAAAGG
TATGGCCGATCGTATCATTAACATGAGAGAACAATTAGTCAAATACCTTAAAAAACATGG
TTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGGTTT
AACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTATTTAACTCGTAATGG
TCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATCTCGCTAAAGCAATGGC
TGCCGTTACAAAAGATAATTAA
Length of connected seq. 1272
Full length Seq ID -
Full length Seq. -
Length of full length seq. -