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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE744
Library SL
(Link to library)
Clone ID SLE744
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16478-1
Original site URL
Representative seq. ID SLE744E
(Link to Original site)
Representative DNA sequence 
>SLE744 (SLE744Q) /CSM/SL/SLE7-B/SLE744Q.Seq.d/
CCACCACAACAAGGTTACCCACCACAACAAGGCTACCCACCACAACAGCCAGCATACGGT
GGGTATGGTGCCTATCAAACCACATCCTATGGTGCCTATCAACAACAACCAGCATATGGC
GCATACNCACAACAANCAGCATATGGTGCATACCCAGTAGCACCAGTTGTAGGAGTCACA
CCAGTGGTTGGTGTTACACCAGTTGTTGCACCAGTTGTAGTAGGTACTGATATTCCATAC
ACTCTTCATCTTANAGGTAGTCGTTTAGATCGTAAAGATGTTTTCTCAAAATCTGATCNA
TTCGTTACAATCTCTGTTCCAAGAAATCCACTTNATGTTAGCAAAAGTCATTCTAGTTAT
GTTGGTAAAGCTAAAGGTGGTTCAACCGCTAATTGGGCTGTCATTCATAGAACTGAAACT
ATTAGAGATAATCAAAATCCAGTTTGGCAACCATTCACTCTAGGTTTACACGCTTTATGT
GGTGGTAATTTAGAAAGACCAATTAAAATTGAATGTTGGGATTATGATAGTGGTGGTGCT
CATGATATCATTGGTAAGAGTGTAACTTCTCTTCGTGAAATGCAAGTTATGAAAGAAATT
CGTCTTGTAAATAAAAAGAGAATTGGTATTGGTAAAACTTCTGGTACTATTGAAGTTTTA
AAATGTTCACCAGCTTAAAATTAATTTTAATTTTATTTTATACAATTAAGAAAAAAAGAT
GAAATTATTTTTCATCTTTTAATAAAAAAAAAAAAAAGATATATTTTATACTATTTGAAA
AAAAAAAA
sequence update 1999. 7.16
Translated Amino Acid sequence 
PPQQGYPPQQGYPPQQPAYGGYGAYQTTSYGAYQQQPAYGAYXQQXAYGAYPVAPVVGVT
PVVGVTPVVAPVVVGTDIPYTLHLXGSRLDRKDVFSKSDXFVTISVPRNPLXVSKSHSSY
VGKAKGGSTANWAVIHRTETIRDNQNPVWQPFTLGLHALCGGNLERPIKIECWDYDSGGA
HDIIGKSVTSLREMQVMKEIRLVNKKRIGIGKTSGTIEVLKCSPA*n*f*fyfiqlrkkd
eiifhllikkkkryilyylkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
PPQQGYPPQQGYPPQQPAYGGYGAYQTTSYGAYQQQPAYGAYXQQXAYGAYPVAPVVGVT
PVVGVTPVVAPVVVGTDIPYTLHLXGSRLDRKDVFSKSDXFVTISVPRNPLXVSKSHSSY
VGKAKGGSTANWAVIHRTETIRDNQNPVWQPFTLGLHALCGGNLERPIKIECWDYDSGGA
HDIIGKSVTSLREMQVMKEIRLVNKKRIGIGKTSGTIEVLKCSPA*n*f*fyfiqlrkkd
eiifhllikkkkryilyylkkk


Frame B:
hhnkvthhnkathhnsqhtvgmvpikphpmvpinnnqhmahthnxqhmvhtq*hql*esh
qwlvlhqllhql**vlifhtlfilxvvv*ivkmfsqnlixslqslfqeihxmlakvilvm
lvklkvvqpliglsfielklleiikiqfgnhsl*vytlyvvvi*kdqlklnvgimivvvl
mislvrv*llfvkckl*kkfvl*ikrelvlvkllvllkf*nvhqlkinfnfilyn*ekkm
klffif**kkkkdifyti*kkk


Frame C:
tttrlptttrlptttasirwvwclsnhilwclstttsiwrixttxsiwcipsstscrsht
sgwcytscctscsry*ysihsssxr*sfrs*rcflki*sirynlcskkstxc*qksf*lc
w*s*rwfnr*lgchs*n*ny*r*sksslatihsrftrfmww*frktn*n*mlgl**wwcs
*yhw*ecnfss*nasyernssck*kenwyw*nfwyy*sfkmftslklililfytikkkr*
nyfssfnkkkkkiyfilfekkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE744 (SLE744Q) /CSM/SL/SLE7-B/SLE744Q.Seq.d/                       1402   0.0
SLE431 (SLE431Q) /CSM/SL/SLE4-B/SLE431Q.Seq.d/                        739   0.0
SLE418 (SLE418Q) /CSM/SL/SLE4-A/SLE418Q.Seq.d/                        739   0.0
SLE677 (SLE677Q) /CSM/SL/SLE6-D/SLE677Q.Seq.d/                        684   0.0
SLE692 (SLE692Q) /CSM/SL/SLE6-D/SLE692Q.Seq.d/                        591   e-168
SLE189 (SLE189Q) /CSM/SL/SLE1-D/SLE189Q.Seq.d/                        244   2e-63
VFO662 (VFO662Q) /CSM/VF/VFO6-C/VFO662Q.Seq.d/                         94   4e-18
VFO328 (VFO328Q) /CSM/VF/VFO3-B/VFO328Q.Seq.d/                         94   4e-18
VFN769 (VFN769Q) /CSM/VF/VFN7-C/VFN769Q.Seq.d/                         94   4e-18
VFN321 (VFN321Q) /CSM/VF/VFN3-A/VFN321Q.Seq.d/                         94   4e-18
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X60270|X60270.1 D.discoideum DdANN7 mRNA for annexin VII, partial cds.    94   4e-15  2
M69022|M69022.1 D.discoideum annexin VII (synexin) mRNA, complete cds.    94   4e-15  2
X60269|X60269.1 D.discoideum DdANN7 gene for annexin VII, partial cds.    94   4e-15  2
CA409753|CA409753.1 1303_F -P proteoid roots 12 and 14 DAE Lupinus albus cDNA clone 1303 5', mRNA sequence.    78   2e-10  1
X54016|X54016.1 D.discoideum mRNA for 24 kDa protein, homologous to C-terminal  repeat sequence of rhodopsin and synaptophysin.    66   9e-07  1
X54062|X54062.1 Dictyostelium discoideum CABP1-related gene.       66   9e-07  1
AY007806|AY007806.1 Dictyostelium discoideum comitin gene, complete cds.    66   9e-07  1
CD303935|CD303935.1 StrPu691.000300 Sea urchin larva cDNA library MPMGp691 Strongylocentrotus purpuratus cDNA clone MPMGp691N12101;MPI_SURUDI_101N12 3', mRNA sequence.    64   3e-06  1
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    42   7e-05  9
AC133628|AC133628.3 Rattus norvegicus clone CH230-6M13, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50   9e-05  4
dna update 2004. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022128_1(BC022128|pid:none) Mus musculus copine II, mRNA (cDNA...   102   2e-20
(P59108) RecName: Full=Copine-2; AltName: Full=Copine II;  &BC03...   102   2e-20
BC106238_1(BC106238|pid:none) Xenopus laevis hypothetical LOC495...   100   5e-20
BC085079_1(BC085079|pid:none) Xenopus laevis hypothetical LOC495...   100   5e-20
AK292269_1(AK292269|pid:none) Homo sapiens cDNA FLJ77640 complet...   100   9e-20
(Q96FN4) RecName: Full=Copine-2; AltName: Full=Copine II;  &AB46...   100   9e-20
AK292912_1(AK292912|pid:none) Homo sapiens cDNA FLJ77305 complet...    97   6e-19
AY890887_1(AY890887|pid:none) Synthetic construct Homo sapiens c...    97   6e-19
(O75131) RecName: Full=Copine-3; AltName: Full=Copine III;  &AB3...    97   6e-19
BC036242_1(BC036242|pid:none) Homo sapiens copine III, mRNA (cDN...    97   6e-19
protein update 2009. 4.18
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.30  top: 0.50  tms: 0.07  mit: 0.10  mip: 0.15
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLE744 is end
5' end seq. ID SLE744F
5' end seq. 
>SLE744F.Seq
CCACCACAACAAGGTTACCCACCACAACAAGGCTACCCACCACAACAGCCAGCATACGGT
GGGTATGGTGCCTATCAAACCACATCCTATGGTGCCTATCAACAACAACCAGCATATGGC
GCATACACACAACAATCAGCATATGGTGCATACCCAGTAGCACCAGTTGTAGGAGTCACA
CCAGTGGTTGGTGTTACACCAGTTGTTGCACCAGTTGTAGTAGGTACTGATATTCCATAC
ACTCTTCATCTTACAGGTAGTCGTTTAGATCGTAAAGATGTTTTCTCAAAATCTGATCTA
TTCGTTACAATCTCTGTTCCAAGAAATCCACTTAATGTTAGCAAAAGTCATTCTAGTTAT
GTTGGTAAAGCTAAAGGTGGTTCAACCGCTAATTGGGCTGTCATTCATAGAACTGAAACT
ATTAGAGATAATCAAAATCCAGTTTGGCAACCATTCACTCTAGGTTTACACGCTTTATGT
GGTGGTAATTTAGAAAGACCAATTAAAATTGAATGTTGGGATTATGATAGTGGTGGTG--
--------
Length of 5' end seq. 538
3' end seq. ID SLE744Z
3' end seq. 
>SLE744Z.Seq
----------CCTATCAACAACAACCAGCATATGGCGCATACCCACAACAACCAGCATAT
GGTGCATACCCAGTAGCACCAGTTGTAGGAGTCACACCAGTGGTTGGTGTTACACCAGTT
GTTGCACCAGTTGTAGTAGGTACTGATATTCCATACACTCTTCATCTTAAAGGTAGTCGT
TTAGATCGTAAAGATGTTTTCTCAAAATCTGATCCATTCGTTACAATCTCTGTTCCAAGA
AATCCACTTTATGTTAGCAAAAGTCATTCTAGTTATGTTGGTAAAGCTAAAGGTGGTTCA
ACCGCTAATTGGGCTGTCATTCATAGAACTGAAACTATTAGAGATAATCAAAATCCAGTT
TGGCAACCATTCACTCTAGGTTTACACGCTTTATGTGGTGGTAATTTAGAAAGACCAATT
AAAATTGAATGTTGGGATTATGATAGTGGTGGTGCTCATGATATCATTGGTAAGAGTGTA
ACTTCTCTTCGTGAAATGCAAGTTATGAAAGAAATTCGTCTTGTAAATAAAAAGAGAATT
GGTATTGGTAAAACTTCTGGTACTATTGAAGTTTTAAAATGTTCACCAGCTTAAAATTAA
TTTTAATTTTATTTTATACAATTAAGAAAAAAAGATGAAATTATTTTTCATCTTTTAATA
AAAAAAAAAAAAAGATATATTTTATACTATTTGAAAAAAAAAAA
Length of 3' end seq. 694
Connected seq. ID SLE744P
Connected seq. 
>SLE744P.Seq
CCACCACAACAAGGTTACCCACCACAACAAGGCTACCCACCACAACAGCCAGCATACGGT
GGGTATGGTGCCTATCAAACCACATCCTATGGTGCCTATCAACAACAACCAGCATATGGC
GCATACACACAACAATCAGCATATGGTGCATACCCAGTAGCACCAGTTGTAGGAGTCACA
CCAGTGGTTGGTGTTACACCAGTTGTTGCACCAGTTGTAGTAGGTACTGATATTCCATAC
ACTCTTCATCTTACAGGTAGTCGTTTAGATCGTAAAGATGTTTTCTCAAAATCTGATCTA
TTCGTTACAATCTCTGTTCCAAGAAATCCACTTAATGTTAGCAAAAGTCATTCTAGTTAT
GTTGGTAAAGCTAAAGGTGGTTCAACCGCTAATTGGGCTGTCATTCATAGAACTGAAACT
ATTAGAGATAATCAAAATCCAGTTTGGCAACCATTCACTCTAGGTTTACACGCTTTATGT
GGTGGTAATTTAGAAAGACCAATTAAAATTGAATGTTGGGATTATGATAGTGGTGGTG--
--------CCTATCAACAACAACCAGCATATGGCGCATACCCACAACAACCAGCATATGG
TGCATACCCAGTAGCACCAGTTGTAGGAGTCACACCAGTGGTTGGTGTTACACCAGTTGT
TGCACCAGTTGTAGTAGGTACTGATATTCCATACACTCTTCATCTTAAAGGTAGTCGTTT
AGATCGTAAAGATGTTTTCTCAAAATCTGATCCATTCGTTACAATCTCTGTTCCAAGAAA
TCCACTTTATGTTAGCAAAAGTCATTCTAGTTATGTTGGTAAAGCTAAAGGTGGTTCAAC
CGCTAATTGGGCTGTCATTCATAGAACTGAAACTATTAGAGATAATCAAAATCCAGTTTG
GCAACCATTCACTCTAGGTTTACACGCTTTATGTGGTGGTAATTTAGAAAGACCAATTAA
AATTGAATGTTGGGATTATGATAGTGGTGGTGCTCATGATATCATTGGTAAGAGTGTAAC
TTCTCTTCGTGAAATGCAAGTTATGAAAGAAATTCGTCTTGTAAATAAAAAGAGAATTGG
TATTGGTAAAACTTCTGGTACTATTGAAGTTTTAAAATGTTCACCAGCTTAAAATTAATT
TTAATTTTATTTTATACAATTAAGAAAAAAAGATGAAATTATTTTTCATCTTTTAATAAA
AAAAAAAAAAAGATATATTTTATACTATTTGAAAAAAAAAAA
Length of connected seq. 1232
Full length Seq ID SLE744E
Full length Seq. 
>SLE744E.Seq
CCACCACAACAAGGTTACCCACCACAACAAGGCTACCCACCACAACAGCCAGCATACGGT
GGGTATGGTGCCTATCAAACCACATCCTATGGTGCCTATCAACAACAACCAGCATATGGC
GCATACNCACAACAANCAGCATATGGTGCATACCCAGTAGCACCAGTTGTAGGAGTCACA
CCAGTGGTTGGTGTTACACCAGTTGTTGCACCAGTTGTAGTAGGTACTGATATTCCATAC
ACTCTTCATCTTANAGGTAGTCGTTTAGATCGTAAAGATGTTTTCTCAAAATCTGATCNA
TTCGTTACAATCTCTGTTCCAAGAAATCCACTTNATGTTAGCAAAAGTCATTCTAGTTAT
GTTGGTAAAGCTAAAGGTGGTTCAACCGCTAATTGGGCTGTCATTCATAGAACTGAAACT
ATTAGAGATAATCAAAATCCAGTTTGGCAACCATTCACTCTAGGTTTACACGCTTTATGT
GGTGGTAATTTAGAAAGACCAATTAAAATTGAATGTTGGGATTATGATAGTGGTGGTGCT
CATGATATCATTGGTAAGAGTGTAACTTCTCTTCGTGAAATGCAAGTTATGAAAGAAATT
CGTCTTGTAAATAAAAAGAGAATTGGTATTGGTAAAACTTCTGGTACTATTGAAGTTTTA
AAATGTTCACCAGCTTAAAATTAATTTTAATTTTATTTTATACAATTAAGAAAAAAAGAT
GAAATTATTTTTCATCTTTTAATAAAAAAAAAAAAAAGATATATTTTATACTATTTGAAA
AAAAAAAA
Length of full length seq. 788