SLE726
Library SL
(Link to library)
Clone ID SLE726
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLE726Z
(Link to Original site)
Representative DNA sequence
>SLE726 (SLE726Q) /CSM/SL/SLE7-B/SLE726Q.Seq.d/
XXXXXXXXXXAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCG
AAAAAGTTAACTTTGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTG
CCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCA
TTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTG
CCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAAC
TCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAAC
CAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTA
TCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTA
AAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTC
AAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGT
TTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAAT
CAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTATCAAACATA
sequence update 1998. 6. 1
Translated Amino Acid sequence
---KKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVI
KRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQP
EDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQ
TGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikh


Translated Amino Acid sequence (All Frames)
Frame A:
---KKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVI
KRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQP
EDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQ
TGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikh


Frame B:
---rkhtslksksmvvqsskkltlllptlkrpstslvslpkmn*smlsv*pkvkvsmvsl
kdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnq
ktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplk
lvvlpsrkslsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsni


Frame C:
---estrp*npsqwwfnrrks*lcccql*kdrqrhwclcrk*inrcyrcnqr*rfqwch*
kmgcp*itkkdp*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstr
rr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsn
wsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFC683 (VFC683Q) /CSM/VF/VFC6-D/VFC683Q.Seq.d/ 1402 0.0
SLH858 (SLH858Q) /CSM/SL/SLH8-C/SLH858Q.Seq.d/ 1402 0.0
SLH448 (SLH448Q) /CSM/SL/SLH4-B/SLH448Q.Seq.d/ 1402 0.0
SLE726 (SLE726Q) /CSM/SL/SLE7-B/SLE726Q.Seq.d/ 1402 0.0
SLE279 (SLE279Q) /CSM/SL/SLE2-D/SLE279Q.Seq.d/ 1402 0.0
SLC234 (SLC234Q) /CSM/SL/SLC2-B/SLC234Q.Seq.d/ 1402 0.0
SLC231 (SLC231Q) /CSM/SL/SLC2-B/SLC231Q.Seq.d/ 1402 0.0
SLA404 (SLA404Q) /CSM/SL/SLA4-A/SLA404Q.Seq.d/ 1402 0.0
SLG735 (SLG735Q) /CSM/SL/SLG7-B/SLG735Q.Seq.d/ 1400 0.0
VFL402 (VFL402Q) /CSM/VF/VFL4-A/VFL402Q.Seq.d/ 1398 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 942 0.0 2
CB890778|CB890778.1 taa53h06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CN633665|CN633665.1 taf54b09.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 2e-18 3
CN633918|CN633918.1 taf54b09.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CN631404|CN631404.1 taf43b11.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 2e-18 3
CB889634|CB889634.1 taa39c02.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 2e-18 3
CN772324|CN772324.1 tad80b03.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 2e-18 3
CF601988|CF601988.1 tac45d08.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:RL3_BOVIN P39872 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence. 60 2e-18 3
CD566466|CD566466.1 tac05h02.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RL3_DROME O16797 60S RIBOSOMAL PROTEIN L3. [1] ;, mRNA sequence. 60 2e-18 3
CN631697|CN631697.1 taf43b11.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to SW:RL3_MOUSE P27659 60S RIBOSOMAL PROTEIN L3 ;, mRNA sequence. 60 2e-18 3
dna update 2004. 5.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 449 e-125
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib... 293 3e-78
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15... 291 1e-77
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr... 291 1e-77
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM... 291 2e-77
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 290 3e-77
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 290 3e-77
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei... 290 3e-77
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L... 290 4e-77
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407.... 290 4e-77
protein update 2009. 6. 3
PSORT

psg: 0.78 gvh: 0.36 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.09 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SLE726 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE726Z
3' end seq.
>SLE726Z.Seq
----------AAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCG
AAAAAGTTAACTTTGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTG
CCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCA
TTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTG
CCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAAC
TCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAAC
CAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTA
TCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTA
AAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTC
AAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGT
TTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAAT
CAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTATCAAACATA
Length of 3' end seq. 707
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -