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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE725
Library SL
(Link to library)
Clone ID SLE725
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLE725F
(Link to Original site)
Representative DNA sequence 
>SLE725 (SLE725Q) /CSM/SL/SLE7-B/SLE725Q.Seq.d/
GGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATC
CACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCA
AAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGT
TACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTAT
CCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAA
CCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAAXXXXXXXXXX
sequence update 1999. 2.19
Translated Amino Acid sequence 
GVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKG
YILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknk---
Translated Amino Acid sequence (All Frames) 
Frame A:
GVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKG
YILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknk---


Frame B:
vfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kv
tf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikkikik---


Frame C:
csr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrl
hfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*k*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        632   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        632   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        632   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        632   0.0
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        632   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        632   0.0
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        632   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        632   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        632   0.0
SSJ658 (SSJ658Q) /CSM/SS/SSJ6-C/SSJ658Q.Seq.d/                        632   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   632   e-178  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   371   e-162  3
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.    90   4e-31  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88   2e-14  2
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88   1e-13  1
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82   6e-12  1
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76   4e-10  1
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46   4e-07  2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50   0.022  1
AC090925|AC090925.1 Homo sapiens clone RP11-467L20, LOW-PASS SEQUENCE SAMPLING.    38   0.12   2
dna update 2004. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   157   8e-38
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    78   8e-14
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    76   3e-13
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    76   3e-13
Y14966_1(Y14966|pid:none) Penaeus vannamei gene encoding catheps...    74   2e-12
(Q94503) RecName: Full=Cysteine proteinase 6;          EC=3.4.22...    72   6e-12
AJ489298_1(AJ489298|pid:none) Aphis gossypii mRNA for putative c...    71   1e-11
(P09648) RecName: Full=Cathepsin L1;          EC=3.4.22.15; Cont...    71   1e-11
AJ496197_1(AJ496197|pid:none) Myzus persicae mRNA for putative c...    71   1e-11
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    71   1e-11
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLE725 is cyt
5' end seq. ID SLE725F
5' end seq. 
>SLE725F.Seq
GGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATC
CACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCA
AAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGT
TACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTAT
CCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAA
CCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAA----------
Length of 5' end seq. 338
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -