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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE710
Library SL
(Link to library)
Clone ID SLE710
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01273-1
Original site URL
Representative seq. ID SLE710P
(Link to Original site)
Representative DNA sequence 
>SLE710 (SLE710Q) /CSM/SL/SLE7-A/SLE710Q.Seq.d/
CTTGTGATGAAATTATAGAATTCCTTCAAGAGAATGGTAAAGATATTCCACTCTCAGTTT
TATTAAATTTATTAAATATATTTCAAGATTCACAATTTGAATCAAATCCTTCTCCAAATA
TTTGTATTTCAAATCCTATAAATAATAATTGTAATAATAATAATAATAATXXXXXXXXXX
ATTTAGAATTCTTTACAATTGTTGCATCAGTGCCATACGAAACGGATTCAATGTCATCAC
CAACAATAATAAATTCAAATCCTTTCCAAAGAGATGAATATTGTACTGGTTCAGTAGATA
CTCCAGTTACTCATCTCGAGCCATCTTATATAACTAAAACTACAACTGTAAAAACTACTA
CCACAACTAAAAAGATACCTCAACAACAACAACAACAACAAAATAATCAGATTGAAAATA
GTAAATCAATAGTTGAGTCAGATATAAAACAACTACCATTTGATCAACAATCACATCAAA
ATCAACAACACCAAAATTCCACACCAAGAAGTTTTAATCTTTCCCCAAAGTTTAACTCTT
CAACATGTACTGTAAATAGAACTCCAGTTGATAACAATGCAAGCGATTTAAAATCAAGTT
TGGATATGAGAAGATACTCTAGAGATTTAATACCAACCAAAATCACAACATAATTCTTTA
TATATTAATAATTTTTGTATAATTTATAATATCAATTAAAATAAAAAAATAATCAAAGAT
AATCAAAAAAAAAACAAAAAAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
CDEIIEFLQENGKDIPLSVLLNLLNIFQDSQFESNPSPNICISNPINNNCNNNNNN---

---LEFFTIVASVPYETDSMSSPTIINSNPFQRDEYCTGSVDTPVTHLEPSYITKTTTVK
TTTTTKKIPQQQQQQQNNQIENSKSIVESDIKQLPFDQQSHQNQQHQNSTPRSFNLSPKF
NSSTCTVNRTPVDNNASDLKSSLDMRRYSRDLIPTKITT*ffiy**flynl*yqlk*knn
qr*skkkqk
Translated Amino Acid sequence (All Frames) 
Frame A:
lvmkl*nsfkrmvkifhsqfy*iy*iyfkihnlnqillqifvfqil*iiiviiiii---

---i*nslqllhqchtkriqchhqq**iqilskemnivlvq*ilqllisshli*lklql*
kllpqlkrylnnnnnnkiirlkivnq*lsqi*nnyhlinnhikinntkiphqevlifpqs
ltlqhvl*ielqlitmqai*nqvwi*edtlei*yqpksqhnslyinnfciiynin*nkki
ikdnqkknkk

Frame B:
l**nyripsrew*rystlsfikfikyisrfti*iksfskylyfksyk**l******---

---frilynccisairngfnvitnnnkfksfpkr*ilywfsryssyssrailyn*nynck
nyyhn*kdtsttttttk*sd*k**ins*vrykttti*stitsksttpkfhtkkf*sfpkv
*lfnmyck*nss**qckrfkikfgyekil*rfntnqnhniilyiliifv*fiisikikk*
skiikkktkk

Frame C:
CDEIIEFLQENGKDIPLSVLLNLLNIFQDSQFESNPSPNICISNPINNNCNNNNNN---

---LEFFTIVASVPYETDSMSSPTIINSNPFQRDEYCTGSVDTPVTHLEPSYITKTTTVK
TTTTTKKIPQQQQQQQNNQIENSKSIVESDIKQLPFDQQSHQNQQHQNSTPRSFNLSPKF
NSSTCTVNRTPVDNNASDLKSSLDMRRYSRDLIPTKITT*ffiy**flynl*yqlk*knn
qr*skkkqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG556 (SSG556Q) /CSM/SS/SSG5-C/SSG556Q.Seq.d/                        505   e-142
SSF551 (SSF551Q) /CSM/SS/SSF5-C/SSF551Q.Seq.d/                        505   e-142
SLE710 (SLE710Q) /CSM/SL/SLE7-A/SLE710Q.Seq.d/                        505   e-142
SSG854 (SSG854Q) /CSM/SS/SSG8-C/SSG854Q.Seq.d/                        500   e-140
SSM416 (SSM416Q) /CSM/SS/SSM4-A/SSM416Q.Seq.d/                         40   0.047
SSI578 (SSI578Q) /CSM/SS/SSI5-D/SSI578Q.Seq.d/                         40   0.047
SSD448 (SSD448Q) /CSM/SS/SSD4-B/SSD448Q.Seq.d/                         40   0.047
SHJ732 (SHJ732Q) /CSM/SH/SHJ7-B/SHJ732Q.Seq.d/                         40   0.047
SHC707 (SHC707Q) /CSM/SH/SHC7-A/SHC707Q.Seq.d/                         40   0.047
SFI327 (SFI327Q) /CSM/SF/SFI3-B/SFI327Q.Seq.d/                         40   0.047
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             38   2e-06  13
AC113655|AC113655.4 Rattus norvegicus clone CH230-307E9, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    40   2e-04  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   5e-04  16
AC110470|AC110470.4 Rattus norvegicus clone CH230-13H19, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    40   7e-04  8
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2.    38   0.001  13
AE015940|AE015940.1 Clostridium tetani E88, section 5 of 10 of the complete genome.    42   0.001  9
AC111903|AC111903.4 Rattus norvegicus clone CH230-71P17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    40   0.013  8
AC120435|AC120435.3 Mus musculus clone RP24-555L7, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   0.021  5
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             34   0.037  11
AX344507|AX344507.1 Sequence 354 from Patent WO0200926.            36   0.042  6
dna update 2004. 5.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 759,001,535
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for SLE710 is cyt
5' end seq. ID SLE710F
5' end seq. 
>SLE710F.Seq
CTTGTGATGAAATTATAGAATTCCTTCAAGAGAATGGTAAAGATATTCCACTCTCAGTTT
TATTAAATTTATTAAATATATTTCAAGATTCACAATTTGAATCAAATCCTTCTCCAAATA
TTTGTATTTCAAATCCTATAAATAATAATTGTAATAATAATAATAATAAT----------
Length of 5' end seq. 170
3' end seq. ID SLE710Z
3' end seq. 
>SLE710Z.Seq
----------ATTTAGAATTCTTTACAATTGTTGCATCAGTGCCATACGAAACGGATTCA
ATGTCATCACCAACAATAATAAATTCAAATCCTTTCCAAAGAGATGAATATTGTACTGGT
TCAGTAGATACTCCAGTTACTCATCTCGAGCCATCTTATATAACTAAAACTACAACTGTA
AAAACTACTACCACAACTAAAAAGATACCTCAACAACAACAACAACAACAAAATAATCAG
ATTGAAAATAGTAAATCAATAGTTGAGTCAGATATAAAACAACTACCATTTGATCAACAA
TCACATCAAAATCAACAACACCAAAATTCCACACCAAGAAGTTTTAATCTTTCCCCAAAG
TTTAACTCTTCAACATGTACTGTAAATAGAACTCCAGTTGATAACAATGCAAGCGATTTA
AAATCAAGTTTGGATATGAGAAGATACTCTAGAGATTTAATACCAACCAAAATCACAACA
TAATTCTTTATATATTAATAATTTTTGTATAATTTATAATATCAATTAAAATAAAAAAAT
AATCAAAGATAATCAAAAAAAAAACAAAAAAA
Length of 3' end seq. 562
Connected seq. ID SLE710P
Connected seq. 
>SLE710P.Seq
CTTGTGATGAAATTATAGAATTCCTTCAAGAGAATGGTAAAGATATTCCACTCTCAGTTT
TATTAAATTTATTAAATATATTTCAAGATTCACAATTTGAATCAAATCCTTCTCCAAATA
TTTGTATTTCAAATCCTATAAATAATAATTGTAATAATAATAATAATAAT----------
ATTTAGAATTCTTTACAATTGTTGCATCAGTGCCATACGAAACGGATTCAATGTCATCAC
CAACAATAATAAATTCAAATCCTTTCCAAAGAGATGAATATTGTACTGGTTCAGTAGATA
CTCCAGTTACTCATCTCGAGCCATCTTATATAACTAAAACTACAACTGTAAAAACTACTA
CCACAACTAAAAAGATACCTCAACAACAACAACAACAACAAAATAATCAGATTGAAAATA
GTAAATCAATAGTTGAGTCAGATATAAAACAACTACCATTTGATCAACAATCACATCAAA
ATCAACAACACCAAAATTCCACACCAAGAAGTTTTAATCTTTCCCCAAAGTTTAACTCTT
CAACATGTACTGTAAATAGAACTCCAGTTGATAACAATGCAAGCGATTTAAAATCAAGTT
TGGATATGAGAAGATACTCTAGAGATTTAATACCAACCAAAATCACAACATAATTCTTTA
TATATTAATAATTTTTGTATAATTTATAATATCAATTAAAATAAAAAAATAATCAAAGAT
AATCAAAAAAAAAACAAAAAAA
Length of connected seq. 732
Full length Seq ID -
Full length Seq. -
Length of full length seq. -