SLE695
Library SL
(Link to library)
Clone ID SLE695
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10229-1
Original site URL
Representative seq. ID SLE695E
(Link to Original site)
Representative DNA sequence
>SLE695 (SLE695Q) /CSM/SL/SLE6-D/SLE695Q.Seq.d/
AGACTTCCAAATAACTTTCAAAGAGCAGTTCACATTAGAAGAAAATTATTAGCAAGAGAT
CTTCAAAAGGAACATCAAAGAGCACTTCACGCACAAGCAGTTGTTGCAGCAGCAGAGAAA
GCAGCAACCAGCGGTGAAGATCCATCAAGCATTCAACCAGTTGTCCCACCAACATCAAAT
TTAGATTTTGAAGGTTCATTAACCAACTTACCAGTTGATCATTTCGATTACACCAAAGTT
TTAGGTGCCTGTTGTGAAAATGTAATTGGTTACATTCCAATTCCAGTTGGTGTTGCAGGT
CCAATCCTTTTAGATGGTAAATTAGTTTCAATTCCAATGGCAACCACTGAAGGTTGTTTA
GTTGCATCAACTCATAGAGGTGCTAAAGCCATCACTAAATCTGGTGGTGCTAAAACTGTA
CTCTTACAAAGCGGTATGACTCGTGCACCAGTTTGTCGTTTACCATCATCCATTCGTGCT
GGTGAACTTAAACAATGGATTGAAAATCAAGAGAACTTTTATCAAGTTGCCTCTGCATTC
AACTCTACAAGTAGATTCGCTCGTTTAAAGAGTATTAAAGTTGTGATTGCAGGTAGACTC
GTTTACCTTCGTTTCAAATCTTCCACTGGTGATGCTATGGGTATGAATATGGTTAGCAAA
GGTGTTGAAAAAGCCCTCGAAGTCATCACTGAATACTTCCCAGAGATGGAAGTNCTCTCA
TTGAGTGGTAATGTTTGTACTGATAAGAAACCATCATCAATCAATTGGTTAGAAGGTCGT
GGTAAGAGTGTAGTCGCCGAAGCTGTCATCTCTGGTGATATCGTTAGAGATGTACTTAAA
ACCACAGTCGAAGCTTTAGTATCACTCAACATTGATAAGAATTTAATTGGTTCCGCTATG
GCTGGTTCCATTGGTGGTTTCAATGCTCACGCTTCAAACATTGTCACTGCTCTCTACATT
GCCACTGGTCAAGATCCAGCTCAAAATGTTGAATCTTCAAATTGTATTACCCTCATGGAA
AGTATCAATGGTGGTAAAGATCTTTACATCTCTGTCACTATGCCATCTATTGAAGTTGGT
ACTGTTGGTGGTGGTACACATTTACCAGCTCAATCCGCTTGTCTCGATCTCTTAAAGATT
CGTGGTGCCAATCTCGAACGTCCAGGTGCAAACTCTGAACAATTAGCTCGTGTCGTTGCC
GCCGCTGTGCTCTCTGGTGAATTATCACTTATGAGTGCTCTCGCCGCTGGCCATTTAGTA
CGTTCTCACTTGAAACATAATCGTAAAACTGAAGCTCCTGCTCCACAAGCTGATACAATT
TCGATGACTCATAATTTACCACATTCTGATT
sequence update 1999. 6.18
Translated Amino Acid sequence
RLPNNFQRAVHIRRKLLARDLQKEHQRALHAQAVVAAAEKAATSGEDPSSIQPVVPPTSN
LDFEGSLTNLPVDHFDYTKVLGACCENVIGYIPIPVGVAGPILLDGKLVSIPMATTEGCL
VASTHRGAKAITKSGGAKTVLLQSGMTRAPVCRLPSSIRAGELKQWIENQENFYQVASAF
NSTSRFARLKSIKVVIAGRLVYLRFKSSTGDAMGMNMVSKGVEKALEVITEYFPEMEVLS
LSGNVCTDKKPSSINWLEGRGKSVVAEAVISGDIVRDVLKTTVEALVSLNIDKNLIGSAM
AGSIGGFNAHASNIVTALYIATGQDPAQNVESSNCITLMESINGGKDLYISVTMPSIEVG
TVGGGTHLPAQSACLDLLKIRGANLERPGANSEQLARVVAAAVLSGELSLMSALAAGHLV
RSHLKHNRKTEAPAPQADTISMTHNLPHSD


Translated Amino Acid sequence (All Frames)
Frame A:
RLPNNFQRAVHIRRKLLARDLQKEHQRALHAQAVVAAAEKAATSGEDPSSIQPVVPPTSN
LDFEGSLTNLPVDHFDYTKVLGACCENVIGYIPIPVGVAGPILLDGKLVSIPMATTEGCL
VASTHRGAKAITKSGGAKTVLLQSGMTRAPVCRLPSSIRAGELKQWIENQENFYQVASAF
NSTSRFARLKSIKVVIAGRLVYLRFKSSTGDAMGMNMVSKGVEKALEVITEYFPEMEVLS
LSGNVCTDKKPSSINWLEGRGKSVVAEAVISGDIVRDVLKTTVEALVSLNIDKNLIGSAM
AGSIGGFNAHASNIVTALYIATGQDPAQNVESSNCITLMESINGGKDLYISVTMPSIEVG
TVGGGTHLPAQSACLDLLKIRGANLERPGANSEQLARVVAAAVLSGELSLMSALAAGHLV
RSHLKHNRKTEAPAPQADTISMTHNLPHSD


Frame B:
dfqitfkeqftleeny*qeifkrnikehfthkqllqqqrkqqpavkihqafnqlshqhqi
*ilkvh*ptyqliisitpkf*vpvvkm*lvtfqfqlvlqvqsf*mvn*fqfqwqplkvv*
lhqlievlkpslnlvvlklysykav*lvhqfvvyhhpfvlvnlnnglkikrtfiklplhs
tlqvdslv*rvlkl*lqvdsftfvsnlplvmlwv*iwlakvlkkpsksslntsqrwkxsh
*vvmfvlirnhhqsig*kvvvrv*spklsslvislemylkpqskl*yhstliri*lvplw
lvplvvsmltlqtlsllstlplvkiqlkmlnlqivlpswkvsmvvkiftslslchllklv
llvvvhiyqlnplvsis*rfvvpisnvqvqtlnn*lvslpplcslvnyhl*vlsplai*y
vlt*niivklklllhkliqfr*liiyhili


Frame C:
tsk*lsksssh*kkiiskrsskgtskstsrtssccssressnqr*rsikhstscptnikf
rf*rfinqlts*sfrlhqsfrcll*kcnwlhsnsswccrsnpfrw*isfnsngnh*rlfs
cins*rc*shh*iwwc*nctltkrydsctslsftiihscw*t*tmd*ksrellssclciq
lyk*irsfkey*scdcr*trlpsfqifhw*cygyeyg*qrc*ksprshh*ilprdgsxli
ew*cly**etiinqlvrrsw*ecsrrschlw*yr*rct*nhsrsfsitqh**efnwfryg
wfhwwfqcsrfkhchcslhchwsrssskc*ifklyyphgkyqww*rslhlchyaiy*swy
cwwwytftssirlsrslkdswcqsrtsrckl*tisscrcrrcalw*iityecsrrwpfst
fslet*s*n*sscsts*ynfdds*fttf*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE695 (SLE695Q) /CSM/SL/SLE6-D/SLE695Q.Seq.d/ 2672 0.0
VFA835 (VFA835Q) /CSM/VF/VFA8-B/VFA835Q.Seq.d/ 1298 0.0
VFA752 (VFA752Q) /CSM/VF/VFA7-C/VFA752Q.Seq.d/ 1126 0.0
VSF849 (VSF849Q) /CSM/VS/VSF8-C/VSF849Q.Seq.d/ 864 0.0
VFC592 (VFC592Q) /CSM/VF/VFC5-D/VFC592Q.Seq.d/ 739 0.0
VFO128 (VFO128Q) /CSM/VF/VFO1-B/VFO128Q.Seq.d/ 543 e-153
VFE356 (VFE356Q) /CSM/VF/VFE3-C/VFE356Q.Seq.d/ 194 2e-48
SLH555 (SLH555Q) /CSM/SL/SLH5-C/SLH555Q.Seq.d/ 194 2e-48
SFL321 (SFL321Q) /CSM/SF/SFL3-A/SFL321Q.Seq.d/ 194 2e-48
SFJ741 (SFJ741Q) /CSM/SF/SFJ7-B/SFJ741Q.Seq.d/ 194 2e-48

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L19350|L19350.1 Dictyostelium discoideum hydroxymethylglutaryl CoA reductase (hmgB) mRNA, 3' end. 2672 0.0 1
L19349|L19349.1 Dictyostelium discoideum hydroxymethylglutaryl CoA reductase (hmgA) mRNA, complete cds and flanking regions. 111 5e-87 7
E17177|E17177.1 Candida utilis HMG-CoA reductase gene. 68 2e-39 7
E17178|E17178.1 Candida utilis hmg1 gene for HMG-CoA reductase. 68 1e-37 7
AB012603|AB012603.1 Candida utilis HMG mRNA for HMG-CoA reductase, complete cds. 68 6e-37 7
AL423475|AL423475.1 T7 end of clone AZ0AA008G01 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 62 6e-28 5
I15189|I15189.1 Sequence 5 from patent US 5460949. 60 1e-24 5
M22255|M22255.1 Yeast HMG-CoA reductase (HGM2) gene, complete cds. 60 1e-24 5
U22382|U22382.1 Saccharomyces cerevisiae chromosome XII cosmid 9324. 60 1e-21 5
AL395949|AL395949.1 T7 end of clone AR0AA027C03 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 46 5e-21 6
dna update 2004. 5.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

L19350_1(L19350|pid:none) Dictyostelium discoideum hydroxymethyl... 845 0.0
(P34136) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 845 0.0
(Q12649) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 508 e-142
(P34135) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 506 e-141
(O64966) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 498 e-139
AB294691_1(AB294691|pid:none) Hevea brasiliensis HbHMGR mRNA for... 494 e-138
T03382(T03382) probable hydroxymethylglutaryl-CoA reductase (NAD... 493 e-138
AY488113_1(AY488113|pid:none) Arabidopsis thaliana 3-hydroxy-3-m... 493 e-138
(P14891) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 493 e-138
AJ568024_1(AJ568024|pid:none) Rhizomucor miehei hmgr gene for hy... 489 e-137
protein update 2009. 7. 5
PSORT

psg: 0.48 gvh: 0.46 alm: 0.30 top: 0.57 tms: 0.07 mit: 0.51 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SLE695 is nuc

5' end seq. ID SLE695F
5' end seq.
>SLE695F.Seq
AGACTTCCAAATAACTTTCAAAGAGCAGTTCACATTAGAAGAAAATTATTAGCAAGAGAT
CTTCAAAAGGAACATCAAAGAGCACTTCACGCACAAGCAGTTGTTGCAGCAGCAGAGAAA
GCAGCAACCAGCGGTGAAGATCCATCAAGCATTCAACCAGTTGTCCCACCAACATCAAAT
TTAGATTTTGAAGGTTCATTAACCAACTTACCAGTTGATCATTTCGATTACACCAAAGTT
TTAGGTGCCTGTTGTGAAAATGTAATTGGTTACATTCCAATTCCAGTTGGTGTTGCAGGT
CCAATCCTTTTAGATGGTAAATTAGTTTCAATTCCAATGGCAACCACTGAAGGTTGTTTA
GTTGCATCAACTCATAGAGGTGCTAAAGCCATCACTAAATCTGGTGGTGCTAAAACTGTA
CTCTTACAAAGCGGTATGACTCGTGCACCAGTTTGTCGTTTACCATCATCCATTCGTGCT
GGTGAACTTAAACAATGGATTGAAAATCAAGAGAACTTTTATCAAGTTGCCTCTGCATTC
AACTCTACAAGTAGATTCGCTCGTTTAAAGAGTATTAAAGTTGTGATTGCAGGTAGACTC
GTTTACCTTCGTTTCAAATCTTCCACTGGTGATGCTATGGGTATGAATATGGTTAGCAAA
GGTGTTGAAAAAGCCCTCGAAGTCATCACTGAATACTTCCCAGAGATGGAAGTA------
----
Length of 5' end seq. 714
3' end seq. ID SLE695Z
3' end seq.
>SLE695Z.Seq
----------CCACTGGTGATGCTATGGGTATGAATATGGTTAGCAAAGGTGTTGAAAAA
GCCCTCGAAGTCATCACTGAATACTTCCCAGAGATGGAAGTTCTCTCATTGAGTGGTAAT
GTTTGTACTGATAAGAAACCATCATCAATCAATTGGTTAGAAGGTCGTGGTAAGAGTGTA
GTCGCCGAAGCTGTCATCTCTGGTGATATCGTTAGAGATGTACTTAAAACCACAGTCGAA
GCTTTAGTATCACTCAACATTGATAAGAATTTAATTGGTTCCGCTATGGCTGGTTCCATT
GGTGGTTTCAATGCTCACGCTTCAAACATTGTCACTGCTCTCTACATTGCCACTGGTCAA
GATCCAGCTCAAAATGTTGAATCTTCAAATTGTATTACCCTCATGGAAAGTATCAATGGT
GGTAAAGATCTTTACATCTCTGTCACTATGCCATCTATTGAAGTTGGTACTGTTGGTGGT
GGTACACATTTACCAGCTCAATCCGCTTGTCTCGATCTCTTAAAGATTCGTGGTGCCAAT
CTCGAACGTCCAGGTGCAAACTCTGAACAATTAGCTCGTGTCGTTGCCGCCGCTGTGCTC
TCTGGTGAATTATCACTTATGAGTGCTCTCGCCGCTGGCCATTTAGTACGTTCTCACTTG
AAACATAATCGTAAAACTGAAGCTCCTGCTCCACAAGCTGATACAATTTCGATGACTCAT
AATTTACCACATTCTGATT
Length of 3' end seq. 729
Connected seq. ID SLE695P
Connected seq.
>SLE695P.Seq
AGACTTCCAAATAACTTTCAAAGAGCAGTTCACATTAGAAGAAAATTATTAGCAAGAGAT
CTTCAAAAGGAACATCAAAGAGCACTTCACGCACAAGCAGTTGTTGCAGCAGCAGAGAAA
GCAGCAACCAGCGGTGAAGATCCATCAAGCATTCAACCAGTTGTCCCACCAACATCAAAT
TTAGATTTTGAAGGTTCATTAACCAACTTACCAGTTGATCATTTCGATTACACCAAAGTT
TTAGGTGCCTGTTGTGAAAATGTAATTGGTTACATTCCAATTCCAGTTGGTGTTGCAGGT
CCAATCCTTTTAGATGGTAAATTAGTTTCAATTCCAATGGCAACCACTGAAGGTTGTTTA
GTTGCATCAACTCATAGAGGTGCTAAAGCCATCACTAAATCTGGTGGTGCTAAAACTGTA
CTCTTACAAAGCGGTATGACTCGTGCACCAGTTTGTCGTTTACCATCATCCATTCGTGCT
GGTGAACTTAAACAATGGATTGAAAATCAAGAGAACTTTTATCAAGTTGCCTCTGCATTC
AACTCTACAAGTAGATTCGCTCGTTTAAAGAGTATTAAAGTTGTGATTGCAGGTAGACTC
GTTTACCTTCGTTTCAAATCTTCCACTGGTGATGCTATGGGTATGAATATGGTTAGCAAA
GGTGTTGAAAAAGCCCTCGAAGTCATCACTGAATACTTCCCAGAGATGGAAGTA------
----CCACTGGTGATGCTATGGGTATGAATATGGTTAGCAAAGGTGTTGAAAAAGCCCTC
GAAGTCATCACTGAATACTTCCCAGAGATGGAAGTTCTCTCATTGAGTGGTAATGTTTGT
ACTGATAAGAAACCATCATCAATCAATTGGTTAGAAGGTCGTGGTAAGAGTGTAGTCGCC
GAAGCTGTCATCTCTGGTGATATCGTTAGAGATGTACTTAAAACCACAGTCGAAGCTTTA
GTATCACTCAACATTGATAAGAATTTAATTGGTTCCGCTATGGCTGGTTCCATTGGTGGT
TTCAATGCTCACGCTTCAAACATTGTCACTGCTCTCTACATTGCCACTGGTCAAGATCCA
GCTCAAAATGTTGAATCTTCAAATTGTATTACCCTCATGGAAAGTATCAATGGTGGTAAA
GATCTTTACATCTCTGTCACTATGCCATCTATTGAAGTTGGTACTGTTGGTGGTGGTACA
CATTTACCAGCTCAATCCGCTTGTCTCGATCTCTTAAAGATTCGTGGTGCCAATCTCGAA
CGTCCAGGTGCAAACTCTGAACAATTAGCTCGTGTCGTTGCCGCCGCTGTGCTCTCTGGT
GAATTATCACTTATGAGTGCTCTCGCCGCTGGCCATTTAGTACGTTCTCACTTGAAACAT
AATCGTAAAACTGAAGCTCCTGCTCCACAAGCTGATACAATTTCGATGACTCATAATTTA
CCACATTCTGATT
Length of connected seq. 1443
Full length Seq ID SLE695E
Full length Seq.
>SLE695E.Seq
AGACTTCCAAATAACTTTCAAAGAGCAGTTCACATTAGAAGAAAATTATTAGCAAGAGAT
CTTCAAAAGGAACATCAAAGAGCACTTCACGCACAAGCAGTTGTTGCAGCAGCAGAGAAA
GCAGCAACCAGCGGTGAAGATCCATCAAGCATTCAACCAGTTGTCCCACCAACATCAAAT
TTAGATTTTGAAGGTTCATTAACCAACTTACCAGTTGATCATTTCGATTACACCAAAGTT
TTAGGTGCCTGTTGTGAAAATGTAATTGGTTACATTCCAATTCCAGTTGGTGTTGCAGGT
CCAATCCTTTTAGATGGTAAATTAGTTTCAATTCCAATGGCAACCACTGAAGGTTGTTTA
GTTGCATCAACTCATAGAGGTGCTAAAGCCATCACTAAATCTGGTGGTGCTAAAACTGTA
CTCTTACAAAGCGGTATGACTCGTGCACCAGTTTGTCGTTTACCATCATCCATTCGTGCT
GGTGAACTTAAACAATGGATTGAAAATCAAGAGAACTTTTATCAAGTTGCCTCTGCATTC
AACTCTACAAGTAGATTCGCTCGTTTAAAGAGTATTAAAGTTGTGATTGCAGGTAGACTC
GTTTACCTTCGTTTCAAATCTTCCACTGGTGATGCTATGGGTATGAATATGGTTAGCAAA
GGTGTTGAAAAAGCCCTCGAAGTCATCACTGAATACTTCCCAGAGATGGAAGTNCTCTCA
TTGAGTGGTAATGTTTGTACTGATAAGAAACCATCATCAATCAATTGGTTAGAAGGTCGT
GGTAAGAGTGTAGTCGCCGAAGCTGTCATCTCTGGTGATATCGTTAGAGATGTACTTAAA
ACCACAGTCGAAGCTTTAGTATCACTCAACATTGATAAGAATTTAATTGGTTCCGCTATG
GCTGGTTCCATTGGTGGTTTCAATGCTCACGCTTCAAACATTGTCACTGCTCTCTACATT
GCCACTGGTCAAGATCCAGCTCAAAATGTTGAATCTTCAAATTGTATTACCCTCATGGAA
AGTATCAATGGTGGTAAAGATCTTTACATCTCTGTCACTATGCCATCTATTGAAGTTGGT
ACTGTTGGTGGTGGTACACATTTACCAGCTCAATCCGCTTGTCTCGATCTCTTAAAGATT
CGTGGTGCCAATCTCGAACGTCCAGGTGCAAACTCTGAACAATTAGCTCGTGTCGTTGCC
GCCGCTGTGCTCTCTGGTGAATTATCACTTATGAGTGCTCTCGCCGCTGGCCATTTAGTA
CGTTCTCACTTGAAACATAATCGTAAAACTGAAGCTCCTGCTCCACAAGCTGATACAATT
TCGATGACTCATAATTTACCACATTCTGATT
Length of full length seq. 1351