SLE691
Library SL
(Link to library)
Clone ID SLE691
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLE691Z
(Link to Original site)
Representative DNA sequence
>SLE691 (SLE691Q) /CSM/SL/SLE6-D/SLE691Q.Seq.d/
XXXXXXXXXXTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTA
AACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGAT
GATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGG
GGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGT
GGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGG
AGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAA
TATAATAATTTCTAATTGTATAAAAAAAAAAAAAAAA
sequence update 1998. 5.29
Translated Amino Acid sequence
---VVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWG
TSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknky
nnf*lykkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---scwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmg
ylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*k*i
**fliv*kkkk


Frame B:
---VVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWG
TSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknky
nnf*lykkkkk


Frame C:
---llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgv
phgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikkikini
iisncikkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/ 660 0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/ 660 0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/ 660 0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/ 660 0.0
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/ 660 0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/ 660 0.0
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/ 660 0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/ 660 0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/ 660 0.0
SSJ658 (SSJ658Q) /CSM/SS/SSJ6-C/SSJ658Q.Seq.d/ 660 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 660 0.0 2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 398 e-175 4
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read. 117 2e-39 2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 88 1e-15 3
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 88 1e-13 1
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 76 6e-13 2
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 82 7e-12 1
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 46 5e-07 2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head. 50 0.025 1
CR381546|CR381546.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-219I23. 36 0.13 5
dna update 2004. 5.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 166 3e-40
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 78 8e-14
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 76 3e-13
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 76 3e-13
Y14966_1(Y14966|pid:none) Penaeus vannamei gene encoding catheps... 74 2e-12
(Q94503) RecName: Full=Cysteine proteinase 6; EC=3.4.22... 72 6e-12
AJ489298_1(AJ489298|pid:none) Aphis gossypii mRNA for putative c... 71 1e-11
(P09648) RecName: Full=Cathepsin L1; EC=3.4.22.15; Cont... 71 1e-11
AJ496197_1(AJ496197|pid:none) Myzus persicae mRNA for putative c... 71 1e-11
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR... 71 1e-11
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.41 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.10 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SLE691 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE691Z
3' end seq.
>SLE691Z.Seq
----------TAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTA
AACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGAT
GATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGG
GGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGT
GGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGG
AGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAA
TATAATAATTTCTAATTGTATAAAAAAAAAAAAAAAA
Length of 3' end seq. 387
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -