>SLE686 (SLE686Q) /CSM/SL/SLE6-D/SLE686Q.Seq.d/
XXXXXXXXXXCGTAAGTTATCGCACGTTTAGTCGATGGTAGTAGATTCGATGAATTCAAA
GAACTCTATGGCACAACTTTAATTTGTGGTTTTGCACGTGTACATGGTATGCCAGTTGGT
ATCATCGCCAACAACGGTATTCTCTTTAGTGAAAGTGCCGTCAAGGGTGCCCATTTCATT
GAACTTTGCAATCAAAGAGGTATCCCCTTAGTCTTCCTTCAAAACATCACTGGTTTCATG
GTTGGTAAAACTTATGAATCTAAAGGTATAGCCAAGGATGGCGCTAAAATGGTCATGGCT
GTTGCCACCGCCAAAGTTCCAAAGATTACAATGATCATTGGTGGTAGTTTTGGTGCTGGT
AATTATGGTATGTGTGGTCGTTCCTACAGTCCACGTTTCCTTTACATGTGGCCAAATGCT
AAAATCTCTGTTATGGGTGGAGAACAAGCTGCCTCTGTTTTAGCTCAAATTCAAAAGGAT
AACATGGCAAAAGAAAATAAACAATGGTCACCAGAAGAAGAAAATACTTTCAAAAAACCA
ATCTCTGATAAATTCGAAGAAGAAGGTTCAATCTATTACAGTTCAGCTCGTTGTTGGGAT
GATGGTGTTATCGATCCACAAGATTCTCGTAAAGTTATCGCTTTAAGTTTAAGTGCTTGT
ATGAATCAACCAATTAATCCACCATCTGATGGTTTTGGTGTTTTCAGAATGTAAAA

---*VIARLVDGSRFDEFKELYGTTLICGFARVHGMPVGIIANNGILFSESAVKGAHFIE
LCNQRGIPLVFLQNITGFMVGKTYESKGIAKDGAKMVMAVATAKVPKITMIIGGSFGAGN
YGMCGRSYSPRFLYMWPNAKISVMGGEQAASVLAQIQKDNMAKENKQWSPEEENTFKKPI
SDKFEEEGSIYYSSARCWDDGVIDPQDSRKVIALSLSACMNQPINPPSDGFGVFRM*

Frame A:
---vsyrtfsrw**ir*iqrtlwhnfnlwfctctwyaswyhrqqrysl**kcrqgcpfh*
tlqskryplslpskhhwfhgw*nl*i*rysqgwr*nghgcchrqsskdyndhww*fwcw*
lwyvwsflqstfplhvakc*nlcygwrtsclcfssnskg*hgkrk*tmvtrrrkyfqktn
l**irrrrfnllqfssllg*wcyrstrfs*syrfkfkclyestn*sti*wfwcfqnvk


Frame B:
---*VIARLVDGSRFDEFKELYGTTLICGFARVHGMPVGIIANNGILFSESAVKGAHFIE
LCNQRGIPLVFLQNITGFMVGKTYESKGIAKDGAKMVMAVATAKVPKITMIIGGSFGAGN
YGMCGRSYSPRFLYMWPNAKISVMGGEQAASVLAQIQKDNMAKENKQWSPEEENTFKKPI
SDKFEEEGSIYYSSARCWDDGVIDPQDSRKVIALSLSACMNQPINPPSDGFGVFRM*


Frame C:
---klshv*smvvdsmnsknsmaql*fvvlhvymvcqlvsspttvfslvkvpsrvpisln
faikevsp*ssfktslvswlvklmnlkv*prmalkwswllpppkfqrlq*slvvvlvlvi
mvcvvvptvhvsftcgqmlksllwvenklplf*lkfkritwqkkinnghqkkkilsknqs
linskkkvqsitvqlvvgmmvlsihkilvklsl*v*vlv*inqlihhlmvlvfseck

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE686 (SLE686Q) /CSM/SL/SLE6-D/SLE686Q.Seq.d/                       1400   0.0
AFM534 (AFM534Q) /CSM/AF/AFM5-B/AFM534Q.Seq.d/                       1308   0.0
VFA387 (VFA387Q) /CSM/VF/VFA3-D/VFA387Q.Seq.d/                       1287   0.0
SSI206 (SSI206Q) /CSM/SS/SSI2-A/SSI206Q.Seq.d/                       1239   0.0
VSE164 (VSE164Q) /CSM/VS/VSE1-C/VSE164Q.Seq.d/                       1160   0.0
VFK423 (VFK423Q) /CSM/VF/VFK4-A/VFK423Q.Seq.d/                       1128   0.0
SLE678 (SLE678Q) /CSM/SL/SLE6-D/SLE678Q.Seq.d/                       1084   0.0
FC-BA21 (FC-BA21Q) /CSM/FC/FC-BA/FC-BA21Q.Seq.d/                     1051   0.0
SSJ690 (SSJ690Q) /CSM/SS/SSJ6-D/SSJ690Q.Seq.d/                       1025   0.0
VFK325 (VFK325Q) /CSM/VF/VFK3-B/VFK325Q.Seq.d/                       1013   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.  1390   0.0    1
AK115583|AK115583.1 Ciona intestinalis cDNA, clone:cilv005f19, full insert sequence.    48   3e-17  7
AK112394|AK112394.1 Ciona intestinalis cDNA, clone:ciad047j21, full insert sequence.    48   9e-17  7
BM528741|BM528741.1 sak68a05.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-8074 5' similar to TR:O49501 O49501 HYPOTHETICAL 68.9 KD PROTEIN. ;, mRNA sequence.    58   3e-15  4
CF554478|CF554478.1 GgW62 Infected wheat roots with G.graminis Lambda Zap Express Library Triticum aestivum/Gaeumannomyces graminis mixed EST library cDNA, mRNA sequence.    52   1e-14  4
AV921189|AV921189.1 Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:bags1f09, 3' mRNA sequence.    56   4e-14  4
CA108582|CA108582.1 SCSFHR1046G03.g HR1 Saccharum officinarum cDNA clone SCSFHR1046G03 5', mRNA sequence.    52   3e-11  3
AJ614312|AJ614312.1 Triticum turgidum EST, clone 10032R.           42   3e-11  4
BW441581|BW441581.1 Ciona intestinalis cDNA, clone:cijv046b06, 5'end, single read.    34   4e-11  6
AV943798|AV943798.1 Hordeum vulgare subsp. spontanuem strain H602 cDNA clone:bah18o05, 3' mRNA sequence.    56   7e-11  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T2J9) RecName: Full=Methylcrotonoyl-CoA carboxylase beta chai...   447   e-124
AE008334_10(AE008334|pid:none) Agrobacterium tumefaciens str. C5...   342   9e-93
CP000148_3253(CP000148|pid:none) Geobacter metallireducens GS-15...   329   6e-89
CP000613_374(CP000613|pid:none) Rhodospirillum centenum SW, comp...   328   1e-88
CP000089_92(CP000089|pid:none) Dechloromonas aromatica RCB, comp...   324   1e-87
BC091016_1(BC091016|pid:none) Xenopus tropicalis methylcrotonoyl...   324   2e-87
CU633749_120(CU633749|pid:none) Cupriavidus taiwanensis str. LMG...   323   2e-87
CP000449_1730(CP000449|pid:none) Maricaulis maris MCS10, complet...   323   2e-87
CU633749_1505(CU633749|pid:none) Cupriavidus taiwanensis str. LM...   323   2e-87
CP000514_2094(CP000514|pid:none) Marinobacter aquaeolei VT8, com...   323   3e-87

 psg: 0.50  gvh: 0.59  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLE686 is cyt

>SLE686Z.Seq
----------CGTAAGTTATCGCACGTTTAGTCGATGGTAGTAGATTCGATGAATTCAAA
GAACTCTATGGCACAACTTTAATTTGTGGTTTTGCACGTGTACATGGTATGCCAGTTGGT
ATCATCGCCAACAACGGTATTCTCTTTAGTGAAAGTGCCGTCAAGGGTGCCCATTTCATT
GAACTTTGCAATCAAAGAGGTATCCCCTTAGTCTTCCTTCAAAACATCACTGGTTTCATG
GTTGGTAAAACTTATGAATCTAAAGGTATAGCCAAGGATGGCGCTAAAATGGTCATGGCT
GTTGCCACCGCCAAAGTTCCAAAGATTACAATGATCATTGGTGGTAGTTTTGGTGCTGGT
AATTATGGTATGTGTGGTCGTTCCTACAGTCCACGTTTCCTTTACATGTGGCCAAATGCT
AAAATCTCTGTTATGGGTGGAGAACAAGCTGCCTCTGTTTTAGCTCAAATTCAAAAGGAT
AACATGGCAAAAGAAAATAAACAATGGTCACCAGAAGAAGAAAATACTTTCAAAAAACCA
ATCTCTGATAAATTCGAAGAAGAAGGTTCAATCTATTACAGTTCAGCTCGTTGTTGGGAT
GATGGTGTTATCGATCCACAAGATTCTCGTAAAGTTATCGCTTTAAGTTTAAGTGCTTGT
ATGAATCAACCAATTAATCCACCATCTGATGGTTTTGGTGTTTTCAGAATGTAAAA