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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE674
Library SL
(Link to library)
Clone ID SLE674
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15421-1|Contig-U15646-1
Original site URL
Representative seq. ID SLE674P
(Link to Original site)
Representative DNA sequence 
>SLE674 (SLE674Q) /CSM/SL/SLE6-D/SLE674Q.Seq.d/
AAATAACTAAAAAAAAAAAAAAAAAAANAAAAGGAAAAAAAGAAGGAAAACAAAACAAAT
CAAAAAGAAAGAAAAAAAAGAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAANTG
TCAGCACAAAGACAATTTTCAGAAGATCTTTGGGATAAATTTGAATCAGTTGTTAAAAAA
GTTGATAATGGTAAAXXXXXXXXXXCAGTCAAACTTTTAATTCAATTTTTAAAATATAAA
ACGTTATAATAATAATAATAAAATAAAATAAATGATATATAATTTCTATCATTGGTATAA
TATAAAAAA
sequence update 2001. 3. 1
Translated Amino Acid sequence 
k*LKKKKKKXKEKKKENKTNQKERKKRKKNQKKKKKKKKXSAQRQFSEDLWDKFESVVKK
VDNGK---

---VKLLIQFLKYKTL*****nkindi*flslv*ykk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*LKKKKKKXKEKKKENKTNQKERKKRKKNQKKKKKKKKXSAQRQFSEDLWDKFESVVKK
VDNGK---

---qsnf*fnf*nikrynnnnkik*miynfyhwynik

Frame B:
nn*kkkkkxkrkkrrktkqikkkekkekktkkkkkkkkxcqhkdnfqkifginlnqllkk
limv---

---sqtfnsifki*nviiiiik*nk*yiisiigii*k

Frame C:
itkkkkkkxkgkkegkqnkskrkkkkkkkpkkkkkkkkxvstktifrrslg*i*isc*ks
**w*---

---VKLLIQFLKYKTL*****nkindi*flslv*ykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE674 (SLE674Q) /CSM/SL/SLE6-D/SLE674Q.Seq.d/                        161   8e-39
SLE682 (SLE682Q) /CSM/SL/SLE6-D/SLE682Q.Seq.d/                         96   4e-19
SSL590 (SSL590Q) /CSM/SS/SSL5-D/SSL590Q.Seq.d/                         44   0.001
VSI256 (VSI256Q) /CSM/VS/VSI2-C/VSI256Q.Seq.d/                         40   0.019
CFC602 (CFC602Q) /CSM/CF/CFC6-A/CFC602Q.Seq.d/                         38   0.075
VFK156 (VFK156Q) /CSM/VF/VFK1-C/VFK156Q.Seq.d/                         36   0.30
VFH531 (VFH531Q) /CSM/VF/VFH5-B/VFH531Q.Seq.d/                         34   1.2
SFK134 (SFK134Q) /CSM/SF/SFK1-B/SFK134Q.Seq.d/                         34   1.2
SFI367 (SFI367Q) /CSM/SF/SFI3-C/SFI367Q.Seq.d/                         34   1.2
FC-BP10 (FC-BP10Q) /CSM/FC/FC-BP/FC-BP10Q.Seq.d/                       34   1.2
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   153   9e-38  2
(AU061574) Dictyostelium discoideum slug cDNA, clone SLE674.      153   5e-33  1
(AU061577) Dictyostelium discoideum slug cDNA, clone SLE682.       88   7e-18  2
(AC160366) Bos taurus clone CH240-88I18, WORKING DRAFT SEQUE...    46   0.76   1
(AC222853) Bos taurus clone CH240-436I20, WORKING DRAFT SEQU...    46   0.76   1
(DU857189) 49648 Tomato HindIII BAC Library Solanum lycopers...    46   0.76   1
(AX926716) Sequence 6 from Patent WO03084989.                      44   3.0    1
(ED566877) AUAC-aag36b01.g1 Ascaris suum whole genome shotgu...    44   3.0    1
(ED398333) AUAC-aar90f12.b1 Ascaris suum whole genome shotgu...    44   3.0    1
(ED308567) AUAC-aag28g02.b1 Ascaris suum whole genome shotgu...    44   3.0    1
dna update 2009. 4.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 139,308,728
protein update 2009. 6. 3
PSORT 

 psg: 0.27  gvh: 0.07  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.08
 nuc: 1.15  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLE674 is nuc
5' end seq. ID SLE674F
5' end seq. 
>SLE674F.Seq
AAATAACTAAAAAAAAAAAAAAAAAAANAAAAGGAAAAAAAGAAGGAAAACAAAACAAAT
CAAAAAGAAAGAAAAAAAAGAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAANTG
TCAGCACAAAGACAATTTTCAGAAGATCTTTGGGATAAATTTGAATCAGTTGTTAAAAAA
GTTGATAATGGTAAA----------
Length of 5' end seq. 195
3' end seq. ID SLE674Z
3' end seq. 
>SLE674Z.Seq
----------CAGTCAAACTTTTAATTCAATTTTTAAAATATAAAACGTTATAATAATAA
TAATAAAATAAAATAAATGATATATAATTTCTATCATTGGTATAATATAAAAAA
Length of 3' end seq. 104
Connected seq. ID SLE674P
Connected seq. 
>SLE674P.Seq
AAATAACTAAAAAAAAAAAAAAAAAAANAAAAGGAAAAAAAGAAGGAAAACAAAACAAAT
CAAAAAGAAAGAAAAAAAAGAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAANTG
TCAGCACAAAGACAATTTTCAGAAGATCTTTGGGATAAATTTGAATCAGTTGTTAAAAAA
GTTGATAATGGTAAA----------CAGTCAAACTTTTAATTCAATTTTTAAAATATAAA
ACGTTATAATAATAATAATAAAATAAAATAAATGATATATAATTTCTATCATTGGTATAA
TATAAAAAA
Length of connected seq. 299
Full length Seq ID -
Full length Seq. -
Length of full length seq. -