NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE664
Library SL
(Link to library)
Clone ID SLE664
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLE664E
(Link to Original site)
Representative DNA sequence 
>SLE664 (SLE664Q) /CSM/SL/SLE6-C/SLE664Q.Seq.d/
ATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCC
GTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGT
GTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAA
ACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGAT
AAGAAAGGTGCTGCTGCCCCATCAAAAAATANATAAATAAATAATATTTCTTAATAAATA
GCATTTTATAATAATTTTAAAAAAAAAAAA
sequence update 1998. 5.28
Translated Amino Acid sequence 
IVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQ
TVAVGVIKSTVKKAPGKAGDKKGAAAPSKNX*innis**iafynnfkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQ
TVAVGVIKSTVKKAPGKAGDKKGAAAPSKNX*innis**iafynnfkkkk


Frame B:
ssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvlnpslnthh*vvspsei*dk
pspsvssnqpsrkpqvkpvirkvllphqkixk*iiflnk*hfiiilkkk


Frame C:
rr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*ilh*iptirsfrrqryetn
rrrrchqinrqespr*sr**ercccpikkxink*yflinsil**f*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI414 (VSI414Q) /CSM/VS/VSI4-A/VSI414Q.Seq.d/                        521   e-147
VSF761 (VSF761Q) /CSM/VS/VSF7-C/VSF761Q.Seq.d/                        521   e-147
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        521   e-147
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/                        521   e-147
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/                        521   e-147
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/                        521   e-147
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/                        521   e-147
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/                        521   e-147
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/                        521   e-147
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/                        521   e-147
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al...   521   e-144  1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   521   e-144  1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   521   e-144  1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   521   e-144  1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   521   e-144  1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2...   521   e-144  1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0...   521   e-144  1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2...   521   e-144  1
(AU268657) Dictyostelium discoideum vegetative cDNA clone:VS...   521   e-144  1
(AU266030) Dictyostelium discoideum vegetative cDNA clone:VS...   521   e-144  1
dna update 2009. 4.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   140   2e-32
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   140   2e-32
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   140   2e-32
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B...    97   2e-19
(Q00251) RecName: Full=Elongation factor 1-alpha;          Short...    96   3e-19
AF398148_1(AF398148|pid:none) Brassica rapa subsp. pekinensis tr...    96   4e-19
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom...    96   4e-19
AF054510_1(AF054510|pid:none) Yarrowia lipolytica translation el...    96   5e-19
AY445082_1(AY445082|pid:none) Metarhizium anisopliae strain E6 t...    95   9e-19
(P40911) RecName: Full=Elongation factor 1-alpha;          Short...    95   9e-19
protein update 2009. 7. 5
PSORT 

 psg: 0.69  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLE664 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE664E
Full length Seq. 
>SLE664E.Seq
ATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCC
GTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGT
GTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAA
ACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGAT
AAGAAAGGTGCTGCTGCCCCATCAAAAAATANATAAATAAATAATATTTCTTAATAAATA
GCATTTTATAATAATTTTAAAAAAAAAAAA
Length of full length seq. 330