SLE656
Library SL
(Link to library)
Clone ID SLE656
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16357-1
Original site URL
Representative seq. ID SLE656Z
(Link to Original site)
Representative DNA sequence
>SLE656 (SLE656Q) /CSM/SL/SLE6-C/SLE656Q.Seq.d/
XXXXXXXXXXATAATAAAAGAAAAATTGGTGAATTGAAACAATGTACTTCTTGTGGTACA
ACTTCCTTACCAGAGTGGAGAAAAGGTCCAGCTGGAAATCAAAGTTTATGTAATGCCTGT
GGTCTATATTTTGCAAAATTGGTAAGAAGAGAAGCATCCTTAACTTGGAAACCACAAAGT
GTAGTCTCTGTTAATGATCTATTATGTGCTGGAAAAGATCAAAAACAATCAAATACAACA
AGTCAATTAACAACCTTTATAAATTCTGTTGAACATAACCAGCAAATTTTCCAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACCCCAACAACAACAACAACAACAA
CAACAAAATCCTCATCATCAACAATTGCAACAACAACAACAACAACAACAACAACAACAA
TTGCACCATTAAA
sequence update 1998. 5.28
Translated Amino Acid sequence
---NKRKIGELKQCTSCGTTSLPEWRKGPAGNQSLCNACGLYFAKLVRREASLTWKPQSV
VSVNDLLCAGKDQKQSNTTSQLTTFINSVEHNQQIFQQQQQQQQQQQQQQQPQQQQQQQQ
QNPHHQQLQQQQQQQQQQQLHH*


Translated Amino Acid sequence (All Frames)
Frame A:
---**kknw*ietmyflwynfltrvekrsswkskfm*clwsifckigkkrsilnlettkc
slc**simcwkrsktikynksinnlykfc*t*panfptttttttttttttttpttttttt
tksssstiattttttttttiapl


Frame B:
---NKRKIGELKQCTSCGTTSLPEWRKGPAGNQSLCNACGLYFAKLVRREASLTWKPQSV
VSVNDLLCAGKDQKQSNTTSQLTTFINSVEHNQQIFQQQQQQQQQQQQQQQPQQQQQQQQ
QNPHHQQLQQQQQQQQQQQLHH*


Frame C:
---ikeklvn*nnvllvvqlpyqsgekvqleikvyvmpvvyilqnw*eekhp*lgnhkv*
sllmiyyvlekiknnqiqqvn*qpl*illnitskfsnnnnnnnnnnnnnnnpnnnnnnnn
kiliinncnnnnnnnnnnnctik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE656 (SLE656Q) /CSM/SL/SLE6-C/SLE656Q.Seq.d/ 557 e-158
SSK217 (SSK217Q) /CSM/SS/SSK2-A/SSK217Q.Seq.d/ 535 e-151
SSI780 (SSI780Q) /CSM/SS/SSI7-D/SSI780Q.Seq.d/ 36 0.42
CHQ659 (CHQ659Q) /CSM/CH/CHQ6-C/CHQ659Q.Seq.d/ 36 0.42
VSI363 (VSI363Q) /CSM/VS/VSI3-C/VSI363Q.Seq.d/ 34 1.7
SLB452 (SLB452Q) /CSM/SL/SLB4-C/SLB452Q.Seq.d/ 34 1.7
AFK475 (AFK475Q) /CSM/AF/AFK4-D/AFK475Q.Seq.d/ 34 1.7
VSJ813 (VSJ813Q) /CSM/VS/VSJ8-A/VSJ813Q.Seq.d/ 32 6.6
VSJ812 (VSJ812Q) /CSM/VS/VSJ8-A/VSJ812Q.Seq.d/ 32 6.6
VSB380 (VSB380Q) /CSM/VS/VSB3-D/VSB380Q.Seq.d/ 32 6.6

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034896) Dictyostelium discoideum slug cDNA, clone SLE656. 557 e-155 2
(AB183264) Dictyostelium discoideum amvA mRNA for GATA zinc ... 549 e-152 1
(C91295) Dictyostelium discoideum slug cDNA, clone SSK217. 460 e-147 2
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 36 0.42 4
(AC191836) Macaca mulatta clone CH250-462I4, WORKING DRAFT S... 34 0.59 2
(AC190283) Rhesus Macaque BAC CH250-333B12 () complete sequ... 34 0.60 2
(AC069504) Homo sapiens 3 BAC RP11-263A24 (Roswell Park Canc... 38 2.0 3
(CU468366) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 2.1 2
(CT303112) Sus scrofa genomic clone CH242-237J5, genomic sur... 32 2.9 2
(CR352257) Zebrafish DNA sequence from clone CH211-261B21 in... 44 4.3 1
dna update 2009. 4.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54KX0) RecName: Full=GATA zinc finger domain-containing protei... 73 3e-12
(Q54TM6) RecName: Full=GATA zinc finger domain-containing protei... 65 9e-10
CR382137_291(CR382137|pid:none) Debaryomyces hansenii strain CBS... 65 9e-10
(Q54HA4) RecName: Full=GATA zinc finger domain-containing protei... 64 1e-09
(Q75JZ0) RecName: Full=GATA zinc finger domain-containing protei... 64 2e-09
FM178799_1(FM178799|pid:none) Phycomyces blakesleeanus madB gene... 62 6e-09
FM992688_484(FM992688|pid:none) Candida dubliniensis CD36 chromo... 62 8e-09
AF515628_1(AF515628|pid:none) Emericella nidulans GATA-factor (l... 61 1e-08
CR382126_738(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 61 1e-08
(Q75JZ1) RecName: Full=GATA zinc finger domain-containing protei... 60 2e-08
protein update 2009. 6. 3
PSORT

psg: 0.86 gvh: 0.37 alm: 0.51 top: 0.27 tms: 0.00 mit: 0.30 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SLE656 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE656Z
3' end seq.
>SLE656Z.Seq
----------ATAATAAAAGAAAAATTGGTGAATTGAAACAATGTACTTCTTGTGGTACA
ACTTCCTTACCAGAGTGGAGAAAAGGTCCAGCTGGAAATCAAAGTTTATGTAATGCCTGT
GGTCTATATTTTGCAAAATTGGTAAGAAGAGAAGCATCCTTAACTTGGAAACCACAAAGT
GTAGTCTCTGTTAATGATCTATTATGTGCTGGAAAAGATCAAAAACAATCAAATACAACA
AGTCAATTAACAACCTTTATAAATTCTGTTGAACATAACCAGCAAATTTTCCAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACCCCAACAACAACAACAACAACAA
CAACAAAATCCTCATCATCAACAATTGCAACAACAACAACAACAACAACAACAACAACAA
TTGCACCATTAAA
Length of 3' end seq. 423
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -