SLE647
Library SL
(Link to library)
Clone ID SLE647
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16269-1
Original site URL
Representative seq. ID SLE647Z
(Link to Original site)
Representative DNA sequence
>SLE647 (SLE647Q) /CSM/SL/SLE6-B/SLE647Q.Seq.d/
XXXXXXXXXXAATTTGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCC
GCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAA
GGTTACACTCTCCCACGTCCAATGATTGTAACGCTGATATTGTCAGACTCGTCAACTCTG
ATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAG
TTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCG
TCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAA
AGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGA
TTTGTTTTCTAAAAAA
sequence update 1998. 5.28
Translated Amino Acid sequence
---ictrwslr*ihhld*IRFRTIRLNLWYLCQIICSKERLHSPTSNDCNADIVRLVNSD
EIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIKVSKK
NQLRAKLVAATFNQ*ifk*icflk


Translated Amino Acid sequence (All Frames)
Frame A:
---ictrwslr*ihhld*IRFRTIRLNLWYLCQIICSKERLHSPTSNDCNADIVRLVNSD
EIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIKVSKK
NQLRAKLVAATFNQ*ifk*icflk


Frame B:
---fapgghlgrfiiwtksafeqldstfgtfakssaqkkgytlprpmivtlilsdsstlm
ksklplepaksssnvqlpqfvvlth*rtyvl*ln*tqppsqpvvlklnh*nqkvsklakr
in*eln*llplstnkflnrfvf*k


Frame C:
---lhqvvt*vdsssglnplsnn*tqplvplpnhllkrkvtlshvq*l*r*ycqtrql**
npscr*sqqsrrqtsncpsssf*pikeltcyd*ikpsrrlnpsyss*iikikryqs*qke
siks*iscchfqpinf*idlfskk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE647 (SLE647Q) /CSM/SL/SLE6-B/SLE647Q.Seq.d/ 844 0.0
SLG503 (SLG503Q) /CSM/SL/SLG5-A/SLG503Q.Seq.d/ 837 0.0
SLE563 (SLE563Q) /CSM/SL/SLE5-C/SLE563Q.Seq.d/ 837 0.0
SLB401 (SLB401Q) /CSM/SL/SLB4-A/SLB401Q.Seq.d/ 837 0.0
SLH832 (SLH832Q) /CSM/SL/SLH8-B/SLH832Q.Seq.d/ 833 0.0
FC-AP16 (FC-AP16Q) /CSM/FC/FC-AP/FC-AP16Q.Seq.d/ 833 0.0
FC-AL06 (FC-AL06Q) /CSM/FC/FC-AL/FC-AL06Q.Seq.d/ 833 0.0
SLB470 (SLB470Q) /CSM/SL/SLB4-C/SLB470Q.Seq.d/ 829 0.0
SLB472 (SLB472Q) /CSM/SL/SLB4-C/SLB472Q.Seq.d/ 827 0.0
SLB307 (SLB307Q) /CSM/SL/SLB3-A/SLB307Q.Seq.d/ 827 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034890) Dictyostelium discoideum slug cDNA, clone SLE647. 844 0.0 1
(AU039820) Dictyostelium discoideum slug cDNA, clone SLG503. 837 0.0 1
(AU034834) Dictyostelium discoideum slug cDNA, clone SLE563. 837 0.0 1
(AU033754) Dictyostelium discoideum slug cDNA, clone SLB401. 837 0.0 1
(AU284369) Dictyostelium discoideum gamete cDNA clone:FC-AP1... 833 0.0 1
(AU284321) Dictyostelium discoideum gamete cDNA clone:FC-AL0... 833 0.0 1
(AU039464) Dictyostelium discoideum slug cDNA, clone SLH832. 833 0.0 1
(AU033812) Dictyostelium discoideum slug cDNA, clone SLB470. 829 0.0 1
(AU033814) Dictyostelium discoideum slug cDNA, clone SLB472. 827 0.0 1
(AU033678) Dictyostelium discoideum slug cDNA, clone SLB307. 827 0.0 1
dna update 2009. 4.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 65 4e-19
AK060711_1(AK060711|pid:none) Oryza sativa Japonica Group cDNA c... 66 2e-16
BT063074_1(BT063074|pid:none) Zea mays full-length cDNA clone ZM... 63 5e-16
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 62 2e-15
AB071329_1(AB071329|pid:none) Paramecium caudatum mRNA for ribos... 60 6e-15
S41640(S41640;S34289)ribosomal protein L4.e - fission yeast (Sch... 61 7e-15
AM920436_1652(AM920436|pid:none) Penicillium chrysogenum Wiscons... 57 1e-14
AJ720803_1(AJ720803|pid:none) Gallus gallus mRNA for hypothetica... 55 2e-14
CP000080_114(CP000080|pid:none) Leishmania major strain Friedlin... 80 3e-14
AM494966_115(AM494966|pid:none) Leishmania braziliensis chromoso... 79 6e-14
protein update 2009. 6. 3
PSORT

psg: 0.87 gvh: 0.53 alm: 0.48 top: 0.33 tms: 0.00 mit: 0.43 mip: 0.03
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: mitochondrial
28.0 %: nuclear
16.0 %: cytoplasmic
16.0 %: extracellular, including cell wall
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for SLE647 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE647Z
3' end seq.
>SLE647Z.Seq
----------AATTTGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCC
GCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAA
GGTTACACTCTCCCACGTCCAATGATTGTAACGCTGATATTGTCAGACTCGTCAACTCTG
ATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAG
TTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCG
TCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAA
AGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGA
TTTGTTTTCTAAAAAA
Length of 3' end seq. 426
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -