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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE637
Library SL
(Link to library)
Clone ID SLE637
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09190-1
Original site URL
Representative seq. ID SLE637P
(Link to Original site)
Representative DNA sequence 
>SLE637 (SLE637Q) /CSM/SL/SLE6-B/SLE637Q.Seq.d/
TTTTTTTTTTTTTTTTTTTTTTTCCAGATTTATAAATTTGAATTTGGAATTTTAAAATTA
TGATAATAAACCCTTTCATTAATTGGTGTAAAAGGGATAGGATCAGAACCAGTGTAAATT
AAAGATGGTAATGAGTTTTTAGATTGACAACGTTGTTCAATAATATTTGCCATCCAACCA
GTTGTACGAGCTATAACAGAGATTGCAGAAAATAAAAGTGTTGGTATATTTGATTGATGG
AATACTGTTGCATTGTAAAAGTCAACATTTGCATGTACCTTTAAAACATCAAACATTATC
TCTTCAACACGTTCTGATATTGTTTGTAATGAATTATCATCATCATCATCTTCACTATTA
TTATTATTATTATXXXXXXXXXXCAACTATAAACATCTGAACCTGTTGATGCACTTAGTC
TACATGAAAATGTTGATGCTGTTTCAATACCATGCTCAGCATACAATATTAATGATACAT
CTAATGCTTTAACATATTCTAAAATTGGTTCTTCATCTTGTTCTGTAGTGAATTTGTTAT
TATTATTGATATTGTTATTGTTACCTCTATTTAATAATTTTAAAAAATGTCTTGCAAAAC
TATCATTTACTTCAGTTAGGGTATTAATTCTAATACCATTTGATGAAAAATGATACCAAT
AGAATAGAATAGATGGAAATGAACCAATTAATCTATTACTAATTCTATAAATATCATTTT
GTTTTGATTCTGGTGAAATCGTAGAGTAGAATGAACATGCTGTCTTTAAAACATCGATTG
GATGTGCATAAATTGGTATCCTCTCTAATACTTGTTTTAATGATTCTGGTATATATCGAT
AATGTTGTAATTCACTACGATATTCTATTAACTCCCTCTCTGTTGGTAATTCACCATAAA
TTAATAAAAATGATACTTCTTCAAAACTTGATACTGCTGTTAAATCTTTTATATCATATC
CTCGATAGTAAATACTATCTTCATTTACCAAACATATTTTAGATTCATTTGACATTTTAT
TCTTTAATATGGATAAAATAATAAAAATATAAAAAATTCTAATAAAAAAAAA
sequence update 1999. 1.21
Translated Amino Acid sequence 
fffffffsrfinlnlef*nydnkpfh*lv*kg*dqnqcklkmvmsf*idnvvq*ylpsnq
lyel*QRLQKIKVLVYLIDGILLHCKSQHLHVPLKHQTLSLQHVLILFVMNYHHHHLHYY
YYYY---

---NYKHLNLLMHLVYMKMLMLFQYHAQHTILMIHLML*hilklvlhlvl**icyyy*yc
ycylyliilknvlqnyhllqlgy*f*yhlmkndtnrie*memnqliyy*fykyhfvlilv
ks*srmnmlslkhrldvhklvsslilvlmilvyidnvvihydilltpsllvihhklikmi
llqnlilllnllyhildskyylhlpnif*ihltfysliwik**kykkf**kk
Translated Amino Acid sequence (All Frames) 
Frame A:
ffffffffqiykfefgilkl***tlsligvkgigsepv*ikdgnefld*qrcsiifaiqp
vvraiteiaenksvgifd*wntval*kstfactfktsniisstrsdivcnelssssssll
llll---

---ql*tsepvdalslhenvdavsipcsaynindtsnaltyskigssscsvvnlllllil
lllplfnnfkkclaklsftsvrvlilipfdek*yq*nridgnepinlllil*isfcfdsg
eive*nehavfktsigca*igilsntcfndsgiyr*ccnslrysinslsvgnsp*inknd
tsskldtavksfisypr**ilssftkhildsfdilffnmdkiiki*kilikk

Frame B:
fffffffsrfinlnlef*nydnkpfh*lv*kg*dqnqcklkmvmsf*idnvvq*ylpsnq
lyel*QRLQKIKVLVYLIDGILLHCKSQHLHVPLKHQTLSLQHVLILFVMNYHHHHLHYY
YYYY---

---NYKHLNLLMHLVYMKMLMLFQYHAQHTILMIHLML*hilklvlhlvl**icyyy*yc
ycylyliilknvlqnyhllqlgy*f*yhlmkndtnrie*memnqliyy*fykyhfvlilv
ks*srmnmlslkhrldvhklvsslilvlmilvyidnvvihydilltpsllvihhklikmi
llqnlilllnllyhildskyylhlpnif*ihltfysliwik**kykkf**kk

Frame C:
fffffffpdl*i*iwnfkimiinpfinwckrdrirtsvn*rw**vfrlttlfnnichpts
ctsynrdcrk*kcwyi*lmeyccivkvnicmyl*nikhylfntf*ycl**iiiiiiftii
iii---

---tini*tc*ct*st*kc*ccfntmlsiqy**yi*cfnif*nwffilfcsefviiidiv
ivtsi**f*kmscktiiyfs*ginsnti**kmipie*nrwk*tn*sitnsiniilf*fw*
nrrve*tccl*nidwmcinwypl*ylf**fwyisiml*fttify*lplcw*ftin**k*y
ffkt*ycc*ifyiissivntifiyqtyfrfi*hfil*yg*nnkniknsnkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE637 (SLE637Q) /CSM/SL/SLE6-B/SLE637Q.Seq.d/                       1287   0.0
SLJ586 (SLJ586Q) /CSM/SL/SLJ5-D/SLJ586Q.Seq.d/                         52   2e-05
SLH891 (SLH891Q) /CSM/SL/SLH8-D/SLH891Q.Seq.d/                         52   2e-05
SLF649 (SLF649Q) /CSM/SL/SLF6-C/SLF649Q.Seq.d/                         52   2e-05
SLF387 (SLF387Q) /CSM/SL/SLF3-D/SLF387Q.Seq.d/                         52   2e-05
SFH424 (SFH424Q) /CSM/SF/SFH4-A/SFH424Q.Seq.d/                         52   2e-05
SFD595 (SFD595Q) /CSM/SF/SFD5-D/SFD595Q.Seq.d/                         52   2e-05
CHH309 (CHH309Q) /CSM/CH/CHH3-A/CHH309Q.Seq.d/                         52   2e-05
CHB318 (CHB318Q) /CSM/CH/CHB3-A/CHB318Q.Seq.d/                         52   2e-05
VSD479 (VSD479Q) /CSM/VS/VSD4-D/VSD479Q.Seq.d/                         48   3e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034882) Dictyostelium discoideum slug cDNA, clone SLE637.     1287   0.0    1
(AU061561) Dictyostelium discoideum slug cDNA, clone SLE637.      694   0.0    1
(CU462909) Zebrafish DNA sequence from clone RP71-8I12 in li...    66   7e-10  5
(BJ369601) Dictyostelium discoideum cDNA clone:ddc51k04, 5' ...    56   1e-09  2
(DX580079) SBA002_A05.f Sugar beet BAC library USH20 (Code S...    46   4e-09  3
(CR854834) Zebrafish DNA sequence from clone DKEYP-92B10 in ...    60   1e-08  6
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    52   2e-08  5
(CR318596) Zebrafish DNA sequence from clone DKEY-104N16 in ...    68   2e-08  2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    60   3e-08  5
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    44   9e-08  8
dna update 2009. 4.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000507_3285(CP000507|pid:none) Shewanella amazonensis SB2B, co...   171   4e-41
CP000076_1829(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...   168   3e-40
CP000094_1764(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   168   3e-40
AE014299_342(AE014299|pid:none) Shewanella oneidensis MR-1, comp...   167   7e-40
CP000931_1950(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...   166   2e-39
CP000753_3969(CP000753|pid:none) Shewanella baltica OS185, compl...   165   2e-39
CP000386_2348(CP000386|pid:none) Rubrobacter xylanophilus DSM 99...   165   3e-39
CP000606_1814(CP000606|pid:none) Shewanella loihica PV-4, comple...   164   4e-39
AE015451_2314(AE015451|pid:none) Pseudomonas putida KT2440 compl...   163   8e-39
CP000821_2108(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...   163   8e-39
protein update 2009. 6. 3
PSORT 

 psg: 0.81  gvh: 0.42  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLE637 is cyt
5' end seq. ID SLE637F
5' end seq. 
>SLE637F.Seq
TTTTTTTTTTTTTTTTTTTTTTTCCAGATTTATAAATTTGAATTTGGAATTTTAAAATTA
TGATAATAAACCCTTTCATTAATTGGTGTAAAAGGGATAGGATCAGAACCAGTGTAAATT
AAAGATGGTAATGAGTTTTTAGATTGACAACGTTGTTCAATAATATTTGCCATCCAACCA
GTTGTACGAGCTATAACAGAGATTGCAGAAAATAAAAGTGTTGGTATATTTGATTGATGG
AATACTGTTGCATTGTAAAAGTCAACATTTGCATGTACCTTTAAAACATCAAACATTATC
TCTTCAACACGTTCTGATATTGTTTGTAATGAATTATCATCATCATCATCTTCACTATTA
TTATTATTATTAT----------
Length of 5' end seq. 373
3' end seq. ID SLE637Z
3' end seq. 
>SLE637Z.Seq
----------CAACTATAAACATCTGAACCTGTTGATGCACTTAGTCTACATGAAAATGT
TGATGCTGTTTCAATACCATGCTCAGCATACAATATTAATGATACATCTAATGCTTTAAC
ATATTCTAAAATTGGTTCTTCATCTTGTTCTGTAGTGAATTTGTTATTATTATTGATATT
GTTATTGTTACCTCTATTTAATAATTTTAAAAAATGTCTTGCAAAACTATCATTTACTTC
AGTTAGGGTATTAATTCTAATACCATTTGATGAAAAATGATACCAATAGAATAGAATAGA
TGGAAATGAACCAATTAATCTATTACTAATTCTATAAATATCATTTTGTTTTGATTCTGG
TGAAATCGTAGAGTAGAATGAACATGCTGTCTTTAAAACATCGATTGGATGTGCATAAAT
TGGTATCCTCTCTAATACTTGTTTTAATGATTCTGGTATATATCGATAATGTTGTAATTC
ACTACGATATTCTATTAACTCCCTCTCTGTTGGTAATTCACCATAAATTAATAAAAATGA
TACTTCTTCAAAACTTGATACTGCTGTTAAATCTTTTATATCATATCCTCGATAGTAAAT
ACTATCTTCATTTACCAAACATATTTTAGATTCATTTGACATTTTATTCTTTAATATGGA
TAAAATAATAAAAATATAAAAAATTCTAATAAAAAAAAA
Length of 3' end seq. 689
Connected seq. ID SLE637P
Connected seq. 
>SLE637P.Seq
TTTTTTTTTTTTTTTTTTTTTTTCCAGATTTATAAATTTGAATTTGGAATTTTAAAATTA
TGATAATAAACCCTTTCATTAATTGGTGTAAAAGGGATAGGATCAGAACCAGTGTAAATT
AAAGATGGTAATGAGTTTTTAGATTGACAACGTTGTTCAATAATATTTGCCATCCAACCA
GTTGTACGAGCTATAACAGAGATTGCAGAAAATAAAAGTGTTGGTATATTTGATTGATGG
AATACTGTTGCATTGTAAAAGTCAACATTTGCATGTACCTTTAAAACATCAAACATTATC
TCTTCAACACGTTCTGATATTGTTTGTAATGAATTATCATCATCATCATCTTCACTATTA
TTATTATTATTAT----------CAACTATAAACATCTGAACCTGTTGATGCACTTAGTC
TACATGAAAATGTTGATGCTGTTTCAATACCATGCTCAGCATACAATATTAATGATACAT
CTAATGCTTTAACATATTCTAAAATTGGTTCTTCATCTTGTTCTGTAGTGAATTTGTTAT
TATTATTGATATTGTTATTGTTACCTCTATTTAATAATTTTAAAAAATGTCTTGCAAAAC
TATCATTTACTTCAGTTAGGGTATTAATTCTAATACCATTTGATGAAAAATGATACCAAT
AGAATAGAATAGATGGAAATGAACCAATTAATCTATTACTAATTCTATAAATATCATTTT
GTTTTGATTCTGGTGAAATCGTAGAGTAGAATGAACATGCTGTCTTTAAAACATCGATTG
GATGTGCATAAATTGGTATCCTCTCTAATACTTGTTTTAATGATTCTGGTATATATCGAT
AATGTTGTAATTCACTACGATATTCTATTAACTCCCTCTCTGTTGGTAATTCACCATAAA
TTAATAAAAATGATACTTCTTCAAAACTTGATACTGCTGTTAAATCTTTTATATCATATC
CTCGATAGTAAATACTATCTTCATTTACCAAACATATTTTAGATTCATTTGACATTTTAT
TCTTTAATATGGATAAAATAATAAAAATATAAAAAATTCTAATAAAAAAAAA
Length of connected seq. 1062
Full length Seq ID -
Full length Seq. -
Length of full length seq. -