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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE626
Library SL
(Link to library)
Clone ID SLE626
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13337-1|Contig-U15930-1
Original site URL
Representative seq. ID SLE626P
(Link to Original site)
Representative DNA sequence 
>SLE626 (SLE626Q) /CSM/SL/SLE6-B/SLE626Q.Seq.d/
ATTCAACTTTTACATAACAATAATCAAGTTTTATTTATTTATTTATTTATTTACCTTTTT
TCAATAAGATTTTTGGGTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAACANTAAATAACT
TTTTTTAAAAAAAAAATAATAATAATAAAAAAAATAGAAAAAAAAAAAAAAAAACAAAAA
AAGGTGAACAACTAACTTTTTTTTTTTATTTTTTTTTATTTTTTTTAATTTATAAAATTT
GTAAAANTAAAACAAATAAACGACCCACCTTTATTGCAACACCAACACTCAAAGAAAATA
AAAACAACCTTTAAAGATATGCCTGAGGGTCCAAGTATTGGTGCTGAACAACAAACACAA
CAACAACAACAACAACAACAACCACACCAACAAACACAACACCAACAAAGATCTCCCTCA
ACAAATTCATTTGAGGTAATTTCAAGTAATCCAATTTCGGGTTTTTCTGAAAGCGATTCA
XXXXXXXXXXTTAAATAATAATAATAATAATAATACTGATGAAAATATGAATGTTAGTGA
TTCAAATACTACTACAACTACAACAACAACTTCAACTATCGCAACTCAAGAAGGTAATAC
AAATAATGAATAAATAAATTAAAAAATAAAATTAGAAATGTAAAATCAAATAACAA
sequence update 1999. 1.21
Translated Amino Acid sequence 
iqllhnnnqvlfiylfiylfsirflgkekkkkkkkkx*itffkkkiiiikkiekkkkkqk
kvnn*lfffiffyff*FIKFVKXKQINDPPLLQHQHSKKIKTTFKDMPEGPSIGAEQQTQ
QQQQQQQPHQQTQHQQRSPSTNSFEVISSNPISGFSESDS---

---LNNNNNNNTDENMNVSDSNTTTTTTTTSTIATQEGNTNNE*in*kiklem*nqit
Translated Amino Acid sequence (All Frames) 
Frame A:
iqllhnnnqvlfiylfiylfsirflgkekkkkkkkkx*itffkkkiiiikkiekkkkkqk
kvnn*lfffiffyff*FIKFVKXKQINDPPLLQHQHSKKIKTTFKDMPEGPSIGAEQQTQ
QQQQQQQPHQQTQHQQRSPSTNSFEVISSNPISGFSESDS---

---LNNNNNNNTDENMNVSDSNTTTTTTTTSTIATQEGNTNNE*in*kiklem*nqit

Frame B:
fnfyitiikfylfiylftffq*dfwvkkkkkkkkknxk*lflkkk****kk*kkkkknkk
r*ttnffflfffiffnl*nl*x*nk*tthlycntntqrk*kqplkiclrvqvlvlnnkhn
nnnnnnnhtnkhntnkdlpqqihlr*fqviqfrvflkai---

---*iiiiiiilmki*mlviqillqlqqqlqlsqlkkviqimnk*ikk*n*kckik*q

Frame C:
stft*q*ssfiylfiylpffnkifg*rkkkkkkkktxnnff*kknnnnkknrkkkkktkk
geqltfffyfflffliykickxktnkrptfiatptlkenknnl*rya*gskywc*ttntt
ttttttttptnttptkislnkfi*gnfk*snfgff*krf---

---k******y**kyec**fkyyynynnnfnyrnsrr*yk**inklknkirnvksnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE626 (SLE626Q) /CSM/SL/SLE6-B/SLE626Q.Seq.d/                        232   5e-60
VHO167 (VHO167Q) /CSM/VH/VHO1-C/VHO167Q.Seq.d/                        155   1e-36
VHD121 (VHD121Q) /CSM/VH/VHD1-A/VHD121Q.Seq.d/                        155   1e-36
SHC779 (SHC779Q) /CSM/SH/SHC7-D/SHC779Q.Seq.d/                        155   1e-36
SHA295 (SHA295Q) /CSM/SH/SHA2-D/SHA295Q.Seq.d/                        155   1e-36
CHS134 (CHS134Q) /CSM/CH/CHS1-B/CHS134Q.Seq.d/                        155   1e-36
CHN769 (CHN769Q) /CSM/CH/CHN7-C/CHN769Q.Seq.d/                        149   6e-35
VSD884 (VSD884Q) /CSM/VS/VSD8-D/VSD884Q.Seq.d/                         94   3e-18
VSI371 (VSI371Q) /CSM/VS/VSI3-C/VSI371Q.Seq.d/                         48   2e-04
VHP704 (VHP704Q) /CSM/VH/VHP7-A/VHP704Q.Seq.d/                         48   2e-04
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061555) Dictyostelium discoideum slug cDNA, clone SLE626.      232   e-103  4
(BJ369180) Dictyostelium discoideum cDNA clone:ddc49j17, 5' ...   111   1e-49  3
(AU034874) Dictyostelium discoideum slug cDNA, clone SLE626.      157   6e-34  1
(BJ445465) Dictyostelium discoideum cDNA clone:ddv59e17, 3' ...   157   6e-34  1
(BJ438499) Dictyostelium discoideum cDNA clone:ddv37i05, 3' ...   157   6e-34  1
(BJ426591) Dictyostelium discoideum cDNA clone:ddv59e17, 5' ...   157   6e-34  1
(BJ404885) Dictyostelium discoideum cDNA clone:dds29n19, 3' ...   157   6e-34  1
(BJ403374) Dictyostelium discoideum cDNA clone:dds24m24, 3' ...   157   6e-34  1
(BJ386441) Dictyostelium discoideum cDNA clone:ddc58c09, 3' ...   157   6e-34  1
(BJ384484) Dictyostelium discoideum cDNA clone:ddc49j17, 3' ...   151   4e-32  1
dna update 2009. 4.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 421,078,320
protein update 2009. 6. 3
PSORT 

 psg: 0.65  gvh: 0.31  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SLE626 is nuc
5' end seq. ID SLE626F
5' end seq. 
>SLE626F.Seq
ATTCAACTTTTACATAACAATAATCAAGTTTTATTTATTTATTTATTTATTTACCTTTTT
TCAATAAGATTTTTGGGTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAACANTAAATAACT
TTTTTTAAAAAAAAAATAATAATAATAAAAAAAATAGAAAAAAAAAAAAAAAAACAAAAA
AAGGTGAACAACTAACTTTTTTTTTTTATTTTTTTTTATTTTTTTTAATTTATAAAATTT
GTAAAANTAAAACAAATAAACGACCCACCTTTATTGCAACACCAACACTCAAAGAAAATA
AAAACAACCTTTAAAGATATGCCTGAGGGTCCAAGTATTGGTGCTGAACAACAAACACAA
CAACAACAACAACAACAACAACCACACCAACAAACACAACACCAACAAAGATCTCCCTCA
ACAAATTCATTTGAGGTAATTTCAAGTAATCCAATTTCGGGTTTTTCTGAAAGCGATTCA
----------
Length of 5' end seq. 480
3' end seq. ID SLE626Z
3' end seq. 
>SLE626Z.Seq
----------TTAAATAATAATAATAATAATAATACTGATGAAAATATGAATGTTAGTGA
TTCAAATACTACTACAACTACAACAACAACTTCAACTATCGCAACTCAAGAAGGTAATAC
AAATAATGAATAAATAAATTAAAAAATAAAATTAGAAATGTAAAATCAAATAACAA
Length of 3' end seq. 166
Connected seq. ID SLE626P
Connected seq. 
>SLE626P.Seq
ATTCAACTTTTACATAACAATAATCAAGTTTTATTTATTTATTTATTTATTTACCTTTTT
TCAATAAGATTTTTGGGTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAACANTAAATAACT
TTTTTTAAAAAAAAAATAATAATAATAAAAAAAATAGAAAAAAAAAAAAAAAAACAAAAA
AAGGTGAACAACTAACTTTTTTTTTTTATTTTTTTTTATTTTTTTTAATTTATAAAATTT
GTAAAANTAAAACAAATAAACGACCCACCTTTATTGCAACACCAACACTCAAAGAAAATA
AAAACAACCTTTAAAGATATGCCTGAGGGTCCAAGTATTGGTGCTGAACAACAAACACAA
CAACAACAACAACAACAACAACCACACCAACAAACACAACACCAACAAAGATCTCCCTCA
ACAAATTCATTTGAGGTAATTTCAAGTAATCCAATTTCGGGTTTTTCTGAAAGCGATTCA
----------TTAAATAATAATAATAATAATAATACTGATGAAAATATGAATGTTAGTGA
TTCAAATACTACTACAACTACAACAACAACTTCAACTATCGCAACTCAAGAAGGTAATAC
AAATAATGAATAAATAAATTAAAAAATAAAATTAGAAATGTAAAATCAAATAACAA
Length of connected seq. 646
Full length Seq ID -
Full length Seq. -
Length of full length seq. -