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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE611
Library SL
(Link to library)
Clone ID SLE611
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SLE611E
(Link to Original site)
Representative DNA sequence 
>SLE611 (SLE611Q) /CSM/SL/SLE6-A/SLE611Q.Seq.d/
AGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTA
AGNAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTG
AAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGAT
AAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCT
GCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGAC
ACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAAT
CCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGAT
AATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTC
CCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTT
TCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATA
sequence update 1999. 7.16
Translated Amino Acid sequence 
rky*n*KMDCAITKDVEDMLXKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLD
KDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNN
PDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*f
sflkkfk*ink*kiif*k
Translated Amino Acid sequence (All Frames) 
Frame A:
rky*n*KMDCAITKDVEDMLXKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLD
KDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNN
PDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*f
sflkkfk*ink*kiif*k


Frame B:
enikikkwivqlqkm*ric*xnliqmvmvilhlmkl*nv*rkpvqkihyvlplqclflli
rirmelfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*ikti
qmqllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynf
hf*knlnk*inkk*sfkn


Frame C:
kilklknglcnykrcrgyvkxi*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**
g*gwnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqs
rcncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiif
ifkki*ink*iknnllki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                       1009   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                       1009   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                       1009   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                       1009   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                       1009   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                       1009   0.0
SSH153 (SSH153Q) /CSM/SS/SSH1-C/SSH153Q.Seq.d/                       1009   0.0
SSG852 (SSG852Q) /CSM/SS/SSG8-C/SSG852Q.Seq.d/                       1009   0.0
SSG624 (SSG624Q) /CSM/SS/SSG6-A/SSG624Q.Seq.d/                       1009   0.0
SSG166 (SSG166Q) /CSM/SS/SSG1-C/SSG166Q.Seq.d/                       1009   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU076389) Dictyostelium discoideum slug cDNA, clone SSA694.      957   0.0    1
(AU061549) Dictyostelium discoideum slug cDNA, clone SLE611.      957   0.0    1
(AU039116) Dictyostelium discoideum slug cDNA, clone SSM408.      957   0.0    1
(AU039029) Dictyostelium discoideum slug cDNA, clone SSM294.      957   0.0    1
(AU038009) Dictyostelium discoideum slug cDNA, clone SSH153.      957   0.0    1
(AU037726) Dictyostelium discoideum slug cDNA, clone SSE221.      957   0.0    1
(C94491) Dictyostelium discoideum slug cDNA, clone SSL192.        957   0.0    1
(C94487) Dictyostelium discoideum slug cDNA, clone SSL187.        957   0.0    1
(C94276) Dictyostelium discoideum slug cDNA, clone SSK729.        957   0.0    1
(C92993) Dictyostelium discoideum slug cDNA, clone SSF426.        957   0.0    1
dna update 2009. 4.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    78   2e-13
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    70   6e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   1e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    66   6e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     66   6e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    55   1e-06
AJ920259_1(AJ920259|pid:none) Eimeria tenella mRNA for putative ...    54   3e-06
BC074397_1(BC074397|pid:none) Xenopus laevis MGC84373 protein, m...    54   3e-06
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLE611 is nuc
5' end seq. ID SLE611F
5' end seq. 
>SLE611F.Seq
AGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTA
AGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTG
AAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGAT
AAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCT
GCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGAC
ACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAAT
CCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGAT
AATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTC
CCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTT
TCATTTTTAAAAAAATTTAAATAAATAAATAAATA----------
Length of 5' end seq. 575
3' end seq. ID SLE611Z
3' end seq. 
>SLE611Z.Seq
----------AAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGCAAAT
TTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAA
CCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATA
AGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGA
AATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATA
AGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATG
CAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACA
GATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAAC
AATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTT
TAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATA
Length of 3' end seq. 579
Connected seq. ID SLE611P
Connected seq. 
>SLE611P.Seq
AGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTA
AGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTG
AAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGAT
AAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCT
GCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGAC
ACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAAT
CCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGAT
AATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTC
CCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTT
TCATTTTTAAAAAAATTTAAATAAATAAATAAATA----------AAAAATGGATTGTGC
AATTACAAAAGATGTAGAGGATATGTTAAGCAAATTTGATTCAAATGGTGATGGTAATAT
TACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGC
TGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGA
GATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACAT
CTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGA
AGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGA
AAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCA
GGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTC
AATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAA
ATAAAAAATAATCTTTTAAAAATA
Length of connected seq. 1154
Full length Seq ID SLE611E
Full length Seq. 
>SLE611E.Seq
AGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTA
AGNAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTG
AAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGAT
AAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCT
GCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGAC
ACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAAT
CCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGAT
AATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTC
CCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTT
TCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATA
Length of full length seq. 596