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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE607
Library SL
(Link to library)
Clone ID SLE607
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15069-1
Original site URL
Representative seq. ID SLE607F
(Link to Original site)
Representative DNA sequence 
>SLE607 (SLE607Q) /CSM/SL/SLE6-A/SLE607Q.Seq.d/
CAAAATATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGT
GTCTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATAT
GCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGT
ATCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACC
AACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATC
TACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTC
TCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCA
ACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTC
GTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATT
GCCAACTGTGGTCAACTTTAAATTATCAACATATAACTTTTAAAXXXXXXXXXX
sequence update 1999. 1.21
Translated Amino Acid sequence 
qnik*LKMTTVKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKG
IGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTL
SMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVI
ANCGQL*iini*ll---
Translated Amino Acid sequence (All Frames) 
Frame A:
qnik*LKMTTVKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKG
IGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTL
SMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVI
ANCGQL*iini*ll---


Frame B:
ki*nn*k*qllnqppqkthvsslispsvvlkpvk*lwnymptlsqrllktselyvlvkkv
svnqanhyhtkdhlsivlsptlcvkvvtlpwvmvlvvnqstvtnllmktsn*nisvkvhs
qwptlvptpmvhnslsvllqlig*tvntlysvlslkvwmslkrwkllvhnqvklpnqssl
ptvvnfklstynf*---


Frame C:
kykiikndnc*tnlprkptcll*yhhrwc*sr*ssygiicqhcpkdc*klqsfmyw*kry
r*irqtiiiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfrsrytl
ngqrwcqhqwftilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyqtsrhc
qlwstlnyqhitf---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE607 (SLE607Q) /CSM/SL/SLE6-A/SLE607Q.Seq.d/                       1158   0.0
VSD755 (VSD755Q) /CSM/VS/VSD7-C/VSD755Q.Seq.d/                       1136   0.0
VHF401 (VHF401Q) /CSM/VH/VHF4-A/VHF401Q.Seq.d/                       1136   0.0
VHG230 (VHG230Q) /CSM/VH/VHG2-B/VHG230Q.Seq.d/                       1134   0.0
SSK338 (SSK338Q) /CSM/SS/SSK3-B/SSK338Q.Seq.d/                       1134   0.0
CHQ217 (CHQ217Q) /CSM/CH/CHQ2-A/CHQ217Q.Seq.d/                       1130   0.0
CHN256 (CHN256Q) /CSM/CH/CHN2-C/CHN256Q.Seq.d/                       1130   0.0
SSK846 (SSK846Q) /CSM/SS/SSK8-B/SSK846Q.Seq.d/                       1128   0.0
SLK488 (SLK488Q) /CSM/SL/SLK4-D/SLK488Q.Seq.d/                       1124   0.0
SSD343 (SSD343Q) /CSM/SS/SSD3-B/SSD343Q.Seq.d/                       1122   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061547) Dictyostelium discoideum slug cDNA, clone SLE607.     1158   0.0    1
(AU264524) Dictyostelium discoideum vegetative cDNA clone:VS...  1136   0.0    1
(BJ421187) Dictyostelium discoideum cDNA clone:ddv41b02, 5' ...  1136   0.0    1
(BJ421649) Dictyostelium discoideum cDNA clone:ddv43k08, 5' ...  1134   0.0    1
(BJ385148) Dictyostelium discoideum cDNA clone:ddc54a06, 3' ...  1130   0.0    1
(BJ384229) Dictyostelium discoideum cDNA clone:ddc48o14, 3' ...  1130   0.0    1
(BJ382936) Dictyostelium discoideum cDNA clone:ddc46i07, 3' ...  1130   0.0    1
(C94332) Dictyostelium discoideum slug cDNA, clone SSK846.       1128   0.0    1
(C92284) Dictyostelium discoideum slug cDNA, clone SSD343.       1122   0.0    1
(AU269911) Dictyostelium discoideum vegetative cDNA clone:VS...  1106   0.0    1
dna update 2009. 4.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47812_1(U47812|pid:none) Onchocerca volvulus cyclophilin Ovcyp-...   255   7e-67
EU401723_1(EU401723|pid:none) Capsicum annuum cyclophilin mRNA, ...   253   4e-66
EU126917_1(EU126917|pid:none) Gerbera hybrid cultivar cyclophili...   252   6e-66
EU284859_1(EU284859|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   251   1e-65
AF020434_1(AF020434|pid:none) Arabidopsis thaliana cyclophilin (...   250   2e-65
AF126551_1(AF126551|pid:none) Solanum tuberosum subsp. tuberosum...   250   2e-65
EF144376_1(EF144376|pid:none) Populus trichocarpa clone PX0019_B...   250   2e-65
FB823121_1(FB823121|pid:none) Sequence 42394 from Patent WO20080...   250   2e-65
EF122402_1(EF122402|pid:none) Citrus cv. Shiranuhi putative cycl...   250   2e-65
CSTO(A39252)peptidylprolyl isomerase (EC 5.2.1.8) - tomato            249   3e-65
protein update 2009. 6. 3
PSORT 

 psg: 0.50  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLE607 is cyt
5' end seq. ID SLE607F
5' end seq. 
>SLE607F.Seq
CAAAATATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGT
GTCTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATAT
GCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGT
ATCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACC
AACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATC
TACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTC
TCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCA
ACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACTGAAGGTATGGATGTC
GTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACCAAACCAGTCGTCATT
GCCAACTGTGGTCAACTTTAAATTATCAACATATAACTTTTAAA----------
Length of 5' end seq. 584
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -