NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE571
Library SL
(Link to library)
Clone ID SLE571
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15434-1
Original site URL
Representative seq. ID SLE571Z
(Link to Original site)
Representative DNA sequence 
>SLE571 (SLE571Q) /CSM/SL/SLE5-C/SLE571Q.Seq.d/
XXXXXXXXXXAAGTTGCCGTCGTCGCTGGTTACGGTGATGTAGGTAAAGGTTGTGCTCAA
TCATTATCAAAAATGGGTGCTCGTGTTTTAGTCACTGAAATCGATCCAATCAATGCCCTC
CAAGCCTGTATGGATGGTTACCAAATCGTCACCATGGAAACCGCCGCTCCATTATCAAAC
ATTTTCGTCACCACCACCGGTTGTCGTGATATCGTCAGAGGTGAACACTTTGCCGTCATG
AAAGAAGATGCCATCGTTTGTAACATTGGTCACTTTGATTGTGAAATCGATGTCGCTTGG
TTAAACGCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTGACCGTTACACCCTTGCC
AACGGTGTCCACATCATCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACT
GGTCATCCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCC
CTCTGGACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGAT
GAAGAAGTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAA
AAACAATCCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGA
TATTAAAATCTTTTGTTTAATAAATATATAAAACTTTTTTAACAAAAAAAA
sequence update 1998. 5.27
Translated Amino Acid sequence 
---VAVVAGYGDVGKGCAQSLSKMGARVLVTEIDPINALQACMDGYQIVTMETAAPLSNI
FVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNANAKKDTVKPQVDRYTLAN
GVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWTKTEEYPLGVHFLPKILDE
EVARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*nllfnkyiklf*qkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---scrrrwlr*cr*rlcsiiikngcscfsh*nrsnqcppslygwlpnrhhgnrrsiikh
frhhhrls*yrqr*tlcrherrchrl*hwsl*l*nrcrlvkrqrqkryrqtts*plhpcq
rcphhpls*rssrqfrlwywssifcyvklfl*pnfssnrpld*n*ripircplltkdfr*
rscsftfrsirc*inyph*ktirifisssrwsiqs*slqilksfv**iyktfltkk


Frame B:
---VAVVAGYGDVGKGCAQSLSKMGARVLVTEIDPINALQACMDGYQIVTMETAAPLSNI
FVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNANAKKDTVKPQVDRYTLAN
GVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWTKTEEYPLGVHFLPKILDE
EVARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*nllfnkyiklf*qkk


Frame C:
---lpsslvtvm*vkvvlnhyqkwvlvf*slksiqsmpskpvwmvtksspwkpplhyqtf
sspppvvvissevntlps*kkmpsfvtlvtlivksmslg*tptpkkipsnhkltvtplpt
vstsss*lkvvssi*vvvlvihlllcqtlsvtkl*lkspsglklknth*vstsyqrf*mk
kllvyi*in*vln*lpslknnpniyqfqslvhtklittdikifclini*nffnkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH831 (SLH831Q) /CSM/SL/SLH8-B/SLH831Q.Seq.d/                       1374   0.0
SLH447 (SLH447Q) /CSM/SL/SLH4-B/SLH447Q.Seq.d/                       1374   0.0
SLE894 (SLE894Q) /CSM/SL/SLE8-D/SLE894Q.Seq.d/                       1374   0.0
SLE571 (SLE571Q) /CSM/SL/SLE5-C/SLE571Q.Seq.d/                       1374   0.0
SLE547 (SLE547Q) /CSM/SL/SLE5-B/SLE547Q.Seq.d/                       1374   0.0
SLE538 (SLE538Q) /CSM/SL/SLE5-B/SLE538Q.Seq.d/                       1374   0.0
SLE516 (SLE516Q) /CSM/SL/SLE5-A/SLE516Q.Seq.d/                       1374   0.0
SLE515 (SLE515Q) /CSM/SL/SLE5-A/SLE515Q.Seq.d/                       1374   0.0
SLB245 (SLB245Q) /CSM/SL/SLB2-B/SLB245Q.Seq.d/                       1374   0.0
SLB174 (SLB174Q) /CSM/SL/SLB1-D/SLB174Q.Seq.d/                       1374   0.0
own update 1999. 2.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...  1374   0.0    1
(AU052246) Dictyostelium discoideum slug cDNA, clone SLA418.     1374   0.0    1
(AU040015) Dictyostelium discoideum slug cDNA, clone SLH447.     1374   0.0    1
(AU039645) Dictyostelium discoideum slug cDNA, clone SLE894.     1374   0.0    1
(AU039524) Dictyostelium discoideum slug cDNA, clone SLA794.     1374   0.0    1
(AU039463) Dictyostelium discoideum slug cDNA, clone SLH831.     1374   0.0    1
(AU035027) Dictyostelium discoideum slug cDNA, clone SLE516.     1374   0.0    1
(AU035026) Dictyostelium discoideum slug cDNA, clone SLE515.     1374   0.0    1
(AU034842) Dictyostelium discoideum slug cDNA, clone SLE571.     1374   0.0    1
(AU034823) Dictyostelium discoideum slug cDNA, clone SLE547.     1374   0.0    1
dna update 2009. 4.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim...   415   e-115
X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden...   313   4e-89
(O13639) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   310   3e-83
(P27604) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   308   1e-82
AY278950_1(AY278950|pid:none) Branchiostoma belcheri tsingtaunes...   307   2e-82
DQ167408_1(DQ167408|pid:none) Volvariella volvacea S-adenosyl-L-...   305   7e-82
BC135905_1(BC135905|pid:none) Xenopus tropicalis S-adenosylhomoc...   299   5e-80
DQ676850_1(DQ676850|pid:none) Pimephales promelas S-adenosylhomo...   299   6e-80
DQ440384_1(DQ440384|pid:none) Aedes aegypti clone AET-5159 S-ade...   298   1e-79
(Q27580) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   297   2e-79
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLE571 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE571Z
3' end seq. 
>SLE571Z.Seq
----------AAGTTGCCGTCGTCGCTGGTTACGGTGATGTAGGTAAAGGTTGTGCTCAA
TCATTATCAAAAATGGGTGCTCGTGTTTTAGTCACTGAAATCGATCCAATCAATGCCCTC
CAAGCCTGTATGGATGGTTACCAAATCGTCACCATGGAAACCGCCGCTCCATTATCAAAC
ATTTTCGTCACCACCACCGGTTGTCGTGATATCGTCAGAGGTGAACACTTTGCCGTCATG
AAAGAAGATGCCATCGTTTGTAACATTGGTCACTTTGATTGTGAAATCGATGTCGCTTGG
TTAAACGCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTGACCGTTACACCCTTGCC
AACGGTGTCCACATCATCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACT
GGTCATCCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCC
CTCTGGACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGAT
GAAGAAGTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAA
AAACAATCCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGA
TATTAAAATCTTTTGTTTAATAAATATATAAAACTTTTTTAACAAAAAAAA
Length of 3' end seq. 701
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -