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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE561
Library SL
(Link to library)
Clone ID SLE561
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10780-1
Original site URL
Representative seq. ID SLE561Z
(Link to Original site)
Representative DNA sequence 
>SLE561 (SLE561Q) /CSM/SL/SLE5-C/SLE561Q.Seq.d/
XXXXXXXXXXCAAATTATACACCACATGAAATTCCTTCATCACCATACACACCACATAAT
CCACAAACACCCGCAACTCCAAACTCAAGTGAAGATCATGACGAAGAAGTTGAACCACAA
TATTGGTCTGGTACAAAGATTGAAGTAGTCTTTAAGGATTCTGGTAAACATGCCGTAGTT
TTAGATAATCTCTCTGATTCAACCGTTAGAGTTGAAATGTTAGACACCAAAGAAGTAATT
GATAATGTTTCACAATCTCAACTCAATTTGGTTCCACCAGCTAAAAAAGATCGTGTCGTC
ATTGTTAAAGGTAAATTATGTGGTCAAAGTGGTAATCTTTTCATTCTTACTGATGAAAAT
ACTGGTATCGTTAAAATGAATTCAAACTTTGATTTTAAAGTTTTCAAAATGTCTTATATT
GGTAAACTAATAAGATAAATTAATAATTATAAAAAACAAATAAATAAAAAAAAAAAAATA
AATAAAAAAAAAATAAAAAGAAAAAGACTG
sequence update 1998. 5.27
Translated Amino Acid sequence 
---NYTPHEIPSSPYTPHNPQTPATPNSSEDHDEEVEPQYWSGTKIEVVFKDSGKHAVVL
DNLSDSTVRVEMLDTKEVIDNVSQSQLNLVPPAKKDRVVIVKGKLCGQSGNLFILTDENT
GIVKMNSNFDFKVFKMSYIGKLIR*innykkqinkkkkinkkkikrkrl
Translated Amino Acid sequence (All Frames) 
Frame A:
---klytt*nsfitihtt*stntrnsklk*rs*rrs*ttilvwykd*ssl*gfw*tcrsf
r*sl*fnr*s*nvrhqrsn**cftistqfgsts*krscrhc*r*imwskw*sfhsy**ky
wyr*nefkl*f*sfqnvlyw*tnkin**l*ktnk*kkknk*kknkkkkt


Frame B:
---NYTPHEIPSSPYTPHNPQTPATPNSSEDHDEEVEPQYWSGTKIEVVFKDSGKHAVVL
DNLSDSTVRVEMLDTKEVIDNVSQSQLNLVPPAKKDRVVIVKGKLCGQSGNLFILTDENT
GIVKMNSNFDFKVFKMSYIGKLIR*innykkqinkkkkinkkkikrkrl


Frame C:
---iihhmkflhhhthhiihkhpqlqtqvkimtkklnhniglvqrlk*slrilvnmp*f*
iisliqplelkc*tpkk*limfhnlnsiwfhqlkkivssllkvnyvvkvvifsfllmkil
vslk*iqtlilkfskclilvn**dkliiiknk*ikkkk*ikkk*kekd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE719 (SLE719Q) /CSM/SL/SLE7-A/SLE719Q.Seq.d/                        872   0.0
SLE561 (SLE561Q) /CSM/SL/SLE5-C/SLE561Q.Seq.d/                        872   0.0
SLE210 (SLE210Q) /CSM/SL/SLE2-A/SLE210Q.Seq.d/                        872   0.0
CHB876 (CHB876Q) /CSM/CH/CHB8-D/CHB876Q.Seq.d/                        858   0.0
AFC757 (AFC757Q) /CSM/AF/AFC7-C/AFC757Q.Seq.d/                        702   0.0
AFJ755 (AFJ755Q) /CSM/AF/AFJ7-C/AFJ755Q.Seq.d/                        527   e-149
AFJ355 (AFJ355Q) /CSM/AF/AFJ3-C/AFJ355Q.Seq.d/                        204   9e-52
VFJ619 (VFJ619Q) /CSM/VF/VFJ6-A/VFJ619Q.Seq.d/                        168   5e-41
CHD652 (CHD652Q) /CSM/CH/CHD6-C/CHD652Q.Seq.d/                        100   4e-20
VHE636 (VHE636Q) /CSM/VH/VHE6-B/VHE636Q.Seq.d/                         44   0.002
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039540) Dictyostelium discoideum slug cDNA, clone SLE719.      817   0.0    1
(AU034832) Dictyostelium discoideum slug cDNA, clone SLE561.      817   0.0    1
(AU034702) Dictyostelium discoideum slug cDNA, clone SLE210.      811   0.0    1
(BJ377769) Dictyostelium discoideum cDNA clone:ddc25h20, 3' ...   805   0.0    1
(BJ341396) Dictyostelium discoideum cDNA clone:dda6b15, 3' e...   662   0.0    1
(BJ344840) Dictyostelium discoideum cDNA clone:dda20n13, 3' ...   527   e-145  1
(BJ344540) Dictyostelium discoideum cDNA clone:dda19n13, 3' ...   202   9e-48  1
(BJ432850) Dictyostelium discoideum cDNA clone:ddv20e06, 3' ...   167   5e-37  1
(BJ376702) Dictyostelium discoideum cDNA clone:ddc29g14, 3' ...    78   4e-10  1
(AM424632) Vitis vinifera contig VV78X170850.10, whole genom...    48   0.33   1
dna update 2009. 4.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9STN3) RecName: Full=Putative transcription elongation factor ...    54   3e-06
BC097843_1(BC097843|pid:none) Xenopus laevis hypothetical protei...    48   2e-04
BC129066_1(BC129066|pid:none) Xenopus laevis hypothetical protei...    48   2e-04
BC057529_1(BC057529|pid:none) Danio rerio suppressor of Ty 5 hom...    47   3e-04
BC123815_1(BC123815|pid:none) Bos taurus suppressor of Ty 5 homo...    46   5e-04
BC134446_1(BC134446|pid:none) Bos taurus suppressor of Ty 5 homo...    46   5e-04
AB463294_1(AB463294|pid:none) Synthetic construct DNA, clone: pF...    46   5e-04
AK302954_1(AK302954|pid:none) Homo sapiens cDNA FLJ55629 complet...    46   5e-04
AE016830_2187(AE016830|pid:none) Enterococcus faecalis V583, com...    38   0.12
CR382124_663(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    37   0.21
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for SLE561 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE561Z
3' end seq. 
>SLE561Z.Seq
----------CAAATTATACACCACATGAAATTCCTTCATCACCATACACACCACATAAT
CCACAAACACCCGCAACTCCAAACTCAAGTGAAGATCATGACGAAGAAGTTGAACCACAA
TATTGGTCTGGTACAAAGATTGAAGTAGTCTTTAAGGATTCTGGTAAACATGCCGTAGTT
TTAGATAATCTCTCTGATTCAACCGTTAGAGTTGAAATGTTAGACACCAAAGAAGTAATT
GATAATGTTTCACAATCTCAACTCAATTTGGTTCCACCAGCTAAAAAAGATCGTGTCGTC
ATTGTTAAAGGTAAATTATGTGGTCAAAGTGGTAATCTTTTCATTCTTACTGATGAAAAT
ACTGGTATCGTTAAAATGAATTCAAACTTTGATTTTAAAGTTTTCAAAATGTCTTATATT
GGTAAACTAATAAGATAAATTAATAATTATAAAAAACAAATAAATAAAAAAAAAAAAATA
AATAAAAAAAAAATAAAAAGAAAAAGACTG
Length of 3' end seq. 500
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -