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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE552
Library SL
(Link to library)
Clone ID SLE552
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13959-1
Original site URL
Representative seq. ID SLE552E
(Link to Original site)
Representative DNA sequence 
>SLE552 (SLE552Q) /CSM/SL/SLE5-C/SLE552Q.Seq.d/
AACAAAACAAAATGAGTCAAAAAAGTGTGTGCGTTACTTATTTATTATGGCTATTTTTTG
GATTGTTTGGTATCCATAGATTTTATCTAAATCGTCCATGTAGTGGAGTTTTATATCTTT
TCACATGTGGCTGCTTTTTTATTGGATGGTTCATTGATATTTGTTTAATTCCTGGAATGG
TTGAAGATTATAATGCAAAATATGACTCAATGAATAAAACAACAACAACAGTAACTCAAG
TTGTTGTTCAACCAGTTTACCAAGGTTCACCACAACAACAACCATACGGTGCCCCACCAC
AACAACCATACGGTGCTCCACCACAACAACCATACGGTGCTCCACCACAACAACCATACG
GTGCTCCACCACAACAACCATACGGTGCTCCACCACCACAACCATATGGTGCTCCACCAC
CAGGCGCATATGCTCCACAAGGCAATTACCCACCACCATATGGTCCACAATAAATTAAAA
CTATTTATTTCAAAAAAAAAAAATCTAAAAATAAATCATAAAAAAAAAAAAAAAAAAAAA
AAA
sequence update 1998. 5.27
Translated Amino Acid sequence 
QNKMSQKSVCVTYLLWLFFGLFGIHRFYLNRPCSGVLYLFTCGCFFIGWFIDICLIPGMV
EDYNAKYDSMNKTTTTVTQVVVQPVYQGSPQQQPYGAPPQQPYGAPPQQPYGAPPQQPYG
APPQQPYGAPPPQPYGAPPPGAYAPQGNYPPPYGPQ*iktiyfkkkksknks*kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nktk*vkkvcalliyygyfldclvsidfi*ivhvvefyifshvaaflldgslifv*flew
lkiimqnmtq*ikqqqq*lkllfnqftkvhhnnnhtvphhnnhtvlhhnnhtvlhhnnht
vlhhnnhtvlhhhnhmvlhhqahmlhkaithhhmvhnklklfiskkknlkinhkkkkkkk
k


Frame B:
tkqneskkcvrylfimaifwivwyp*ilskssm*wsfisfhmwllfywmvh*ylfnswng
*rl*cki*lne*nnnnsnssccstslprftttttircpttttircsttttircsttttir
csttttircsttttiwcsttrricstrqlpttiwstin*nylfqkkki*k*iikkkkkkk


Frame C:
QNKMSQKSVCVTYLLWLFFGLFGIHRFYLNRPCSGVLYLFTCGCFFIGWFIDICLIPGMV
EDYNAKYDSMNKTTTTVTQVVVQPVYQGSPQQQPYGAPPQQPYGAPPQQPYGAPPQQPYG
APPQQPYGAPPPQPYGAPPPGAYAPQGNYPPPYGPQ*iktiyfkkkksknks*kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE552 (SLE552Q) /CSM/SL/SLE5-C/SLE552Q.Seq.d/                        973   0.0
VSI389 (VSI389Q) /CSM/VS/VSI3-D/VSI389Q.Seq.d/                        965   0.0
SHJ330 (SHJ330Q) /CSM/SH/SHJ3-B/SHJ330Q.Seq.d/                        965   0.0
AFJ575 (AFJ575Q) /CSM/AF/AFJ5-D/AFJ575Q.Seq.d/                        965   0.0
SSB143 (SSB143Q) /CSM/SS/SSB1-B/SSB143Q.Seq.d/                        862   0.0
VSH442 (VSH442Q) /CSM/VS/VSH4-B/VSH442Q.Seq.d/                        793   0.0
SSB142 (SSB142Q) /CSM/SS/SSB1-B/SSB142Q.Seq.d/                        438   e-122
SSB172 (SSB172Q) /CSM/SS/SSB1-C/SSB172Q.Seq.d/                        293   1e-78
VSH734 (VSH734Q) /CSM/VS/VSH7-B/VSH734Q.Seq.d/                         38   0.13
VSF531 (VSF531Q) /CSM/VS/VSF5-B/VSF531Q.Seq.d/                         38   0.13
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034826) Dictyostelium discoideum slug cDNA, clone SLE552.      529   0.0    2
(AU268621) Dictyostelium discoideum vegetative cDNA clone:VS...   529   0.0    2
(BJ396294) Dictyostelium discoideum cDNA clone:dds42l07, 5' ...   529   0.0    2
(BJ327531) Dictyostelium discoideum cDNA clone:dda20e19, 5' ...   529   0.0    2
(AU268622) Dictyostelium discoideum vegetative cDNA clone:VS...   521   0.0    2
(AF310895) Dictyostelium discoideum RIM (rimA) and RacI (rac...   165   e-160  5
(BJ409521) Dictyostelium discoideum cDNA clone:dds42l07, 3' ...   404   e-148  2
(AU267456) Dictyostelium discoideum vegetative cDNA clone:VS...   529   e-147  2
(AU071290) Dictyostelium discoideum slug cDNA, clone SSB143.      434   e-117  1
(C25673) Dictyostelium discoideum slug cDNA, clone SSB143.        194   e-105  4
dna update 2009. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPR3) RecName: Full=TM2 domain-containing protein DDB0214922;...   155   6e-37
CR522870_2882(CR522870|pid:none) Desulfotalea psychrophila LSv54...    75   1e-12
AM286690_819(AM286690|pid:none) Alcanivorax borkumensis SK2, com...    73   5e-12
AY375531_84(AY375531|pid:none) Bacteriophage 44RR2.8t, complete ...    72   1e-11
AY962392_83(AY962392|pid:none) Aeromonas phage 31, complete geno...    72   1e-11
CP001614_2956(CP001614|pid:none) Teredinibacter turnerae T7901, ...    69   8e-11
CP000240_1176(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1...    69   1e-10
CP000142_1745(CP000142|pid:none) Pelobacter carbinolicus DSM 238...    68   2e-10
AE004091_399(AE004091|pid:none) Pseudomonas aeruginosa PAO1, com...    66   7e-10
CP000744_497(CP000744|pid:none) Pseudomonas aeruginosa PA7, comp...    65   9e-10
protein update 2009. 7. 5
PSORT 

 psg: 0.99  gvh: 0.75  alm: 0.28  top: 0.50  tms: 0.07  mit: 0.37  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SLE552 is pla
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE552E
Full length Seq. 
>SLE552E.Seq
AACAAAACAAAATGAGTCAAAAAAGTGTGTGCGTTACTTATTTATTATGGCTATTTTTTG
GATTGTTTGGTATCCATAGATTTTATCTAAATCGTCCATGTAGTGGAGTTTTATATCTTT
TCACATGTGGCTGCTTTTTTATTGGATGGTTCATTGATATTTGTTTAATTCCTGGAATGG
TTGAAGATTATAATGCAAAATATGACTCAATGAATAAAACAACAACAACAGTAACTCAAG
TTGTTGTTCAACCAGTTTACCAAGGTTCACCACAACAACAACCATACGGTGCCCCACCAC
AACAACCATACGGTGCTCCACCACAACAACCATACGGTGCTCCACCACAACAACCATACG
GTGCTCCACCACAACAACCATACGGTGCTCCACCACCACAACCATATGGTGCTCCACCAC
CAGGCGCATATGCTCCACAAGGCAATTACCCACCACCATATGGTCCACAATAAATTAAAA
CTATTTATTTCAAAAAAAAAAAATCTAAAAATAAATCATAAAAAAAAAAAAAAAAAAAAA
AAA
Length of full length seq. 543