NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE543
Library SL
(Link to library)
Clone ID SLE543
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SLE543Z
(Link to Original site)
Representative DNA sequence 
>SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/
XXXXXXXXXXTCTGCCTCTGGTTCCTCTGCTGTTTCAAGTTCTGCCTCTGGTTCTTCTGC
TGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAG
CTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTC
TTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTC
TGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGC
AACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGC
AACCACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGCTGCAACCATAGNTAC
AACCACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTAC
AACCACAACTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATA
ATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATA
ATTTTTAAATTAAATATAAAATAAAT
sequence update 1998. 5.26
Translated Amino Acid sequence 
---CLWFLCCFKFCLWFFCCFIFTIIICCKLFSIFICCKLFSIFICCKLFPIFICIIKLF
PIFICIIKLCPIFICIIKLCSIFICIIFICIIFICIICSNYSCNYNCNYSCNYNCNYNRN
HSYNHSHNHSYNHSCNHXYNHSCNYNCNYNRNHSYNHSYNHNYLLNLIKKHFLSSITTII
ILIIIVSKNDIKNPLFFSIIFKLNIK*
Translated Amino Acid sequence (All Frames) 
Frame A:
---lplvpllfqvlplvllllhlhhhhllqallhlhllqallhlhllqalphlhlhhqal
phlhlhhqalphlhlhhqallhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlqlqlqlqpq
pqlqpqpqpqlqpqlqp*xqpqlqlqlqlqpqpqlqpqlqpqlplkfnqktffikyhynn
nfnnnsikk*y*kspfflynf*ikykin


Frame B:
---CLWFLCCFKFCLWFFCCFIFTIIICCKLFSIFICCKLFSIFICCKLFPIFICIIKLF
PIFICIIKLCPIFICIIKLCSIFICIIFICIIFICIICSNYSCNYNCNYSCNYNCNYNRN
HSYNHSHNHSYNHSCNHXYNHSCNYNCNYNRNHSYNHSYNHNYLLNLIKKHFLSSITTII
ILIIIVSKNDIKNPLFFSIIFKLNIK*


Frame C:
---asgssavsssasgssaassspsssaassspsssaassspsssaassspsssasssss
psssassssapsssassssapsssassssassssassaattaattiattaatttatttat
tatttatttatttaatixtttaatttatttattatttattttts*i*sknifyqvslq**
f****yqkmilkipffsl*fln*i*nk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/                        609   e-173
SLB746 (SLB746Q) /CSM/SL/SLB7-B/SLB746Q.Seq.d/                        603   e-171
SSB820 (SSB820Q) /CSM/SS/SSB8-A/SSB820Q.Seq.d/                        601   e-171
SLK165 (SLK165Q) /CSM/SL/SLK1-C/SLK165Q.Seq.d/                        601   e-171
SLI557 (SLI557Q) /CSM/SL/SLI5-C/SLI557Q.Seq.d/                        601   e-171
SLI431 (SLI431Q) /CSM/SL/SLI4-B/SLI431Q.Seq.d/                        601   e-171
SLH738 (SLH738Q) /CSM/SL/SLH7-B/SLH738Q.Seq.d/                        601   e-171
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        601   e-171
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        601   e-171
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        601   e-171
own update 2005. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034820) Dictyostelium discoideum slug cDNA, clone SLE543.      139   3e-65  4
(BJ399908) Dictyostelium discoideum cDNA clone:dds8b03, 3' e...   139   7e-63  4
(AU034132) Dictyostelium discoideum slug cDNA, clone SLB780.      139   8e-63  4
(AU034708) Dictyostelium discoideum slug cDNA, clone SLE218.      139   8e-63  4
(AU033787) Dictyostelium discoideum slug cDNA, clone SLB438.      139   8e-63  4
(AU040025) Dictyostelium discoideum slug cDNA, clone SLH472.      139   8e-63  4
(AU033617) Dictyostelium discoideum slug cDNA, clone SLB234.      139   9e-63  4
(AU039989) Dictyostelium discoideum slug cDNA, clone SLH386.      139   9e-63  4
(AU034104) Dictyostelium discoideum slug cDNA, clone SLB746.      139   1e-62  4
(AU039265) Dictyostelium discoideum slug cDNA, clone SLH308.      139   1e-62  4
dna update 2009. 4. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 144,418,457
protein update 2009. 6. 3
PSORT 

 psg: 1.00  gvh: 0.54  alm: 0.02  top: 0.53  tms: 0.33  mit: 0.55  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	 28.0 %: plasma membrane
	  4.0 %: vacuolar

>> prediction for SLE543 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE543Z
3' end seq. 
>SLE543Z.Seq
----------TCTGCCTCTGGTTCCTCTGCTGTTTCAAGTTCTGCCTCTGGTTCTTCTGC
TGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAG
CTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTC
TTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTC
TGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGC
AACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGC
AACCACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGCTGCAACCATAGNTAC
AACCACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTAC
AACCACAACTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATA
ATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATA
ATTTTTAAATTAAATATAAAATAAAT
Length of 3' end seq. 616
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -