SLE504
Library SL
(Link to library)
Clone ID SLE504
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16182-1
Original site URL
Representative seq. ID SLE504P
(Link to Original site)
Representative DNA sequence
>SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/
AATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTTT
GGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTACA
ACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAGTAGGAAATGGTACATTA
CCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTT
TGTACTGTTCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCA
AAAACTTATATGGGAACAATTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAA
CAATATAATATTTCAAATCCAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAA
GATTTGTTTGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTA
GGTAGTATTGGTATTAATTATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTT
TTCACTGAAAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTC
TATGAAGCTGTATTAGAAATTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTXX
XXXXXXXXCGATTATGAAAATGGCCCTTTTATTCCCCCCAAATCGATTATTTTCAAAATC
GATTCCCTTAAATTAAATTGGTTCTAAATAAAAACTAAAAACAAAAATAATAAAAAAAAA
ATATCTTTTTTTTTTTAATATTTTTCAAACTGTTTCTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACGATAGTTTCTTTTTTTATTTTCACTTTTTTTTTATTTTGTTTTGAGAAA
sequence update 1999. 1.21
Translated Amino Acid sequence
NDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEVGNGTL
PNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQLNQYIEWMQ
QYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCSTVFKRDYINL
FTEKPQPIDFTEHYDDIFKFYEAVLEIKEGSIAQIIERI---

---DYENGPFIPPKSIIFKIDSLKLNWF*iktknknnkkkisfff*yfsncf*kkkkkkk
kkktivsffiftfflfcfek


Translated Amino Acid sequence (All Frames)
Frame A:
NDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEVGNGTL
PNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQLNQYIEWMQ
QYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCSTVFKRDYINL
FTEKPQPIDFTEHYDDIFKFYEAVLEIKEGSIAQIIERI---

---rl*kwpfyspqidyfqnrfp*iklvlnkn*kqk**kknifffliffklflkkkkkkk
kkkndsfffyfhfffilf*e

Frame B:
mtmtkskstickhqfskqfleislvswvdiiqqlvsmtlqlv*iiqqnmmlslk*emvhy
qis*msmvkmnfygvmlvsfvlfhtlmkligiktsiqllqkliweqlmvln*inisngcn
niifqiqytkhgtsgtimvkiclfhqqhvmislnnqsni*vvlvliiivqqfsreitlif
slknhnqsisqnimmislnsmkly*klkkaqlhkslkef---

---DYENGPFIPPKSIIFKIDSLKLNWF*iktknknnkkkisfff*yfsncf*kkkkkkk
kkktivsffiftfflfcfek

Frame C:
*q*rnrsllyastsfrssfwkflw*vgwisfsnwfl*pynwfklysri*cfl*srkwyit
kyhkcrw*r*tfmv*cwyplycsih**nllg*khlfncfknlygnn*wysiksiyrmdat
i*yfkssipnmgrleqlwsrfvcsinnm**fhstinrtfr*ywy*l*lfnsfqerlh*sf
h*ktttnrfhrtl**yl*il*scirn*rrlnctnh*kn---

---imkmallfppnrlfsksipln*igsk*klktkiikkkylfffnifqtvsekkkkkkk
kkkr*flflfslffyfvlr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/ 1415 0.0
SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/ 1235 0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/ 1166 0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/ 1130 0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/ 1082 0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/ 916 0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/ 916 0.0
SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/ 890 0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/ 797 0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/ 783 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU061512) Dictyostelium discoideum slug cDNA, clone SLE504. 1304 0.0 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 757 0.0 5
(C23678) Dictyostelium discoideum gamete cDNA, clone FC-AD10. 916 0.0 3
(C91571) Dictyostelium discoideum slug cDNA, clone SSK458. 890 0.0 2
(BJ415600) Dictyostelium discoideum cDNA clone:ddv23g06, 5' ... 797 0.0 1
(BJ414588) Dictyostelium discoideum cDNA clone:ddv19a22, 5' ... 783 0.0 1
(BJ425060) Dictyostelium discoideum cDNA clone:ddv54b16, 5' ... 781 0.0 1
(BJ413283) Dictyostelium discoideum cDNA clone:ddv14n24, 5' ... 741 0.0 1
(BJ411824) Dictyostelium discoideum cDNA clone:ddv5p20, 5' e... 741 0.0 1
(BJ402138) Dictyostelium discoideum cDNA clone:dds20i16, 3' ... 642 0.0 3
dna update 2009. 4. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ... 467 e-130
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso... 274 3e-72
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ... 103 8e-21
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis... 103 8e-21
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor; &... 103 1e-20
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran... 102 1e-20
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl... 100 5e-20
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;... 99 3e-19
(Q54WC3) RecName: Full=Cln5-like protein 2; Flags: Precursor; 98 4e-19
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,... 98 4e-19
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.41 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SLE504 is cyt

5' end seq. ID SLE504F
5' end seq.
>SLE504F.Seq
AATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTTT
GGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTACA
ACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAGTAGGAAATGGTACATTA
CCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTT
TGTACTGTTCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCA
AAAACTTATATGGGAACAATTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAA
CAATATAATATTTCAAATCCAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAA
GATTTGTTTGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTA
GGTAGTATTGGTATTAATTATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTT
TTCACTGAAAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTC
TATGAAGCTGTATTAGAAATTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTT--
--------
Length of 5' end seq. 658
3' end seq. ID SLE504Z
3' end seq.
>SLE504Z.Seq
----------CGATTATGAAAATGGCCCTTTTATTCCCCCCAAATCGATTATTTTCAAAA
TCGATTCCCTTAAATTAAATTGGTTCTAAATAAAAACTAAAAACAAAAATAATAAAAAAA
AAATATCTTTTTTTTTTTAATATTTTTCAAACTGTTTCTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACGATAGTTTCTTTTTTTATTTTCACTTTTTTTTTATTTTGTTTTGAGA
AA
Length of 3' end seq. 232
Connected seq. ID SLE504P
Connected seq.
>SLE504P.Seq
AATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTTT
GGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTACA
ACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAGTAGGAAATGGTACATTA
CCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTT
TGTACTGTTCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCA
AAAACTTATATGGGAACAATTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAA
CAATATAATATTTCAAATCCAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAA
GATTTGTTTGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTA
GGTAGTATTGGTATTAATTATAATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTT
TTCACTGAAAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTC
TATGAAGCTGTATTAGAAATTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTT--
--------CGATTATGAAAATGGCCCTTTTATTCCCCCCAAATCGATTATTTTCAAAATC
GATTCCCTTAAATTAAATTGGTTCTAAATAAAAACTAAAAACAAAAATAATAAAAAAAAA
ATATCTTTTTTTTTTTAATATTTTTCAAACTGTTTCTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACGATAGTTTCTTTTTTTATTTTCACTTTTTTTTTATTTTGTTTTGAGAAA
Length of connected seq. 890
Full length Seq ID -
Full length Seq. -
Length of full length seq. -