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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE503
Library SL
(Link to library)
Clone ID SLE503
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14950-1
Original site URL
Representative seq. ID SLE503E
(Link to Original site)
Representative DNA sequence 
>SLE503 (SLE503Q) /CSM/SL/SLE5-A/SLE503Q.Seq.d/
AACATAAATTAGTTGCAGCAAAATGTAGACAAATTATAGAGTTAAAGAATCATGTTTGTG
ATACACCAGATAAGAATTTCGTTGTTATCAATCAAAAAGGTATTGATCCAATTTGTTTGG
ATATGTTAGCAAAAGCAGGTATAATGGGTTTACGTCGTGCCAAACGTAGAAATATGGAGC
GTTTAACATTGGCATGTGGTGGTACAGCAATGAATTCATTGGAAGATTTAACACCAGATT
GTTTAGGTCATGCAGATTTAGTTTATGAACAAACCTTGGGTGAAGAGAAATATACATTTG
TTGAGGGTGTAAAGAATCCATTCTCTTGTACCGTTTTAATTAAAGGTCCAACCAAGCATC
AAATCGAACAAATTAAAGACGCCCTTCGTGACGGTTTACGTGCCGTTAAGAACACAATCG
AAGATAAATGTGTTGTACCAGGTGGTGGTGCTTTCCAAATCGCCGCTTATGCTGATTTAA
TGAAATTCAAAGAAACTATCACTGGTCGTACCAAATTGGGTATTCAAGCATTCGCCGATG
CTCTTTTGGTAGTTCCAAAAACTTTGGCTCAAAACTCTGGTTTCGATCCAATGGATACCA
TCATTAAATTACAAGAGGAATACGCCAAGGGTCATATCGTCGGTTTAGATGTTGAATCAG
GTGAACCAATGGATCCAGTAAGTGAAGGTATTTTCGATCAATATTCTGTATTAAAACAAG
TTTATCGTTCTTCACCTGTTATCGCTTCTCAATTACTCCTCATCGATGAAATTATTAAAG
CTGGTAAAGGTATGAGAGGTTCTTCAGTTCCAGAAGGTCAAGAATAAATATATANNNNNN
TTATAATAATAATAATAATAATAAAATAATAA
sequence update 1999. 7.28
Translated Amino Acid sequence 
HKLVAAKCRQIIELKNHVCDTPDKNFVVINQKGIDPICLDMLAKAGIMGLRRAKRRNMER
LTLACGGTAMNSLEDLTPDCLGHADLVYEQTLGEEKYTFVEGVKNPFSCTVLIKGPTKHQ
IEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADLMKFKETITGRTKLGIQAFADA
LLVVPKTLAQNSGFDPMDTIIKLQEEYAKGHIVGLDVESGEPMDPVSEGIFDQYSVLKQV
YRSSPVIASQLLLIDEIIKAGKGMRGSSVPEGQE*iyxxxiiiiiiik**
Translated Amino Acid sequence (All Frames) 
Frame A:
nin*lqqnvdkl*s*rimfvihqirisllsikkvliqfvwic*qkqv*wvyvvpnveiws
v*hwhvvvqq*ihwki*hqiv*vmqi*fmnkpwvkrnihllrv*rihslvpf*lkvqpsi
ksnklktpfvtvyvplrtqskinvlyqvvvlsksplmli**nskklslvvpnwvfkhspm
lfw*fqklwlktlvsiqwipslnykrntprvissv*mlnqvnqwiq*vkvfsinily*nk
fivlhllsllnysssmkllklvkv*evlqfqkvknkyixxl*******nn


Frame B:
t*iscskm*tnyrvkescl*ytr*efrcyqskry*snlfgyvsksryngftscqt*kyga
fnigmwwysnefigrfntrlfrscrfsl*tnlg*reiyic*gckesillyrfn*rsnqas
nrtn*rrps*rftcr*ehnrr*mcctrwwcfpnrrlc*fneiqrnyhwsyqigyssirrc
sfgssknfgsklwfrsngyhh*itrgirqgsyrrfrc*ir*tngssk*ryfrsifcikts
lsfftcyrfsitphr*ny*sw*ryerffssrrsrinixxxynnnnnnkii


Frame C:
HKLVAAKCRQIIELKNHVCDTPDKNFVVINQKGIDPICLDMLAKAGIMGLRRAKRRNMER
LTLACGGTAMNSLEDLTPDCLGHADLVYEQTLGEEKYTFVEGVKNPFSCTVLIKGPTKHQ
IEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADLMKFKETITGRTKLGIQAFADA
LLVVPKTLAQNSGFDPMDTIIKLQEEYAKGHIVGLDVESGEPMDPVSEGIFDQYSVLKQV
YRSSPVIASQLLLIDEIIKAGKGMRGSSVPEGQE*iyxxxiiiiiiik**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE503 (SLE503Q) /CSM/SL/SLE5-A/SLE503Q.Seq.d/                       1653   0.0
VHD240 (VHD240Q) /CSM/VH/VHD2-B/VHD240Q.Seq.d/                       1467   0.0
VFC806 (VFC806Q) /CSM/VF/VFC8-A/VFC806Q.Seq.d/                       1400   0.0
AFI544 (AFI544Q) /CSM/AF/AFI5-B/AFI544Q.Seq.d/                       1392   0.0
AFD640 (AFD640Q) /CSM/AF/AFD6-B/AFD640Q.Seq.d/                       1324   0.0
AFC158 (AFC158Q) /CSM/AF/AFC1-C/AFC158Q.Seq.d/                       1292   0.0
VFH837 (VFH837Q) /CSM/VF/VFH8-B/VFH837Q.Seq.d/                       1267   0.0
SFJ431 (SFJ431Q) /CSM/SF/SFJ4-B/SFJ431Q.Seq.d/                       1174   0.0
CFI413 (CFI413Q) /CSM/CF/CFI4-A/CFI413Q.Seq.d/                       1170   0.0
VSJ577 (VSJ577Q) /CSM/VS/VSJ5-D/VSJ577Q.Seq.d/                       1084   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...  1629   0.0    1
(BJ438609) Dictyostelium discoideum cDNA clone:ddv37o10, 3' ...  1453   0.0    1
(BJ430117) Dictyostelium discoideum cDNA clone:ddv6l02, 3' e...  1386   0.0    1
(BJ344070) Dictyostelium discoideum cDNA clone:dda18g11, 3' ...  1378   0.0    1
(AU061511) Dictyostelium discoideum slug cDNA, clone SLE503.     1279   0.0    1
(BJ341172) Dictyostelium discoideum cDNA clone:dda5c15, 3' e...  1279   0.0    1
(BJ341853) Dictyostelium discoideum cDNA clone:dda8o10, 3' e...  1271   0.0    2
(BJ434269) Dictyostelium discoideum cDNA clone:ddv16j10, 3' ...  1253   0.0    1
(AU035018) Dictyostelium discoideum slug cDNA, clone SLE503.     1193   0.0    1
(BJ401799) Dictyostelium discoideum cDNA clone:dds19n08, 3' ...  1174   0.0    1
dna update 2009. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF494045_1(AF494045|pid:none) Physarum polycephalum chaperonin c...   410   e-113
AC148814_11(AC148814|pid:none) Oryza sativa (japonica cultivar-g...   353   5e-96
DQ415921_31(DQ415921|pid:none) Cleome spinosa clone BAC Cs2, com...   347   3e-94
AC021640_16(AC021640|pid:none) Arabidopsis thaliana chromosome I...   347   4e-94
EU961370_1(EU961370|pid:none) Zea mays clone 234880 T-complex pr...   347   4e-94
EU970933_1(EU970933|pid:none) Zea mays clone 354231 T-complex pr...   347   4e-94
AF387003_1(AF387003|pid:none) Arabidopsis thaliana putative chap...   347   4e-94
DQ415922_37(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com...   345   1e-93
AY084739_1(AY084739|pid:none) Arabidopsis thaliana clone 116386 ...   345   1e-93
EF147145_1(EF147145|pid:none) Populus trichocarpa clone WS01228_...   340   4e-92
protein update 2009. 7. 5
PSORT 

 psg: 0.55  gvh: 0.47  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLE503 is cyt
5' end seq. ID SLE503F
5' end seq. 
>SLE503F.Seq
AACATAAATTAGTTGCAGCAAAATGTAGACAAATTATAGAGTTAAAGAATCATGTTTGTG
ATACACCAGATAAGAATTTCGTTGTTATCAATCAAAAAGGTATTGATCCAATTTGTTTGG
ATATGTTAGCAAAAGCAGGTATAATGGGTTTACGTCGTGCCAAACGTAGAAATATGGAGC
GTTTAACATTGGCATGTGGTGGTACAGCAATGAATTCATTGGAAGATTTAACACCAGATT
GTTTAGGTCATGCAGATTTAGTTTATGAACAAACCTTGGGTGAAGAGAAATATACATTTG
TTGAGGGTGTAAAGAATCCATTCTCTTGTACCGTTTTAATTAAAGGTCCAACCAAGCATC
AAATCGAACAAATTAAAGACGCCCTTCGTGACGGTTTACGTGCCGTTAAGAACACAATCG
AAGATAAATGTGTTGTACCAGGTGGTGGTGCTTTCCAAATCGCCGCTTATGCTGATTTAA
TGAAATTCAAAGAAACTATCACTGGTCGTACCAAATTGGGTATTCAAGCATTCGCCGATG
CTCTTTTGGTAGTTCCAAAAACTTTGGCTCAAAACTCTGGTTTCGATCCAATGGATACCA
TCATTAAATTACAAGAGGAATACGCCAAGGGTCATATCGTCGGTT----------
Length of 5' end seq. 645
3' end seq. ID SLE503Z
3' end seq. 
>SLE503Z.Seq
----------GGAAGATTTAACACCAGATTGTTTAGGTCATGCAGATTTAGTTTATGAAC
AAACCTTGGGTGAAGAGAAATATACATTTGTTGAGGGTGTAAAGAATCCATTCTCTTGTA
CCGTTTTAATTAAAGGTCCAACCAAGCATCAAATCGAACAAATTAAAGACGCCCTTCGTG
ACGGTTTACGTGCCGTTAAGAACACAATCGAAGATAAATGTGTTGTACCAGGTGGTGGTG
CTTTCCAAATCGCCGCTTATGCTGATTTAATGAAATTCAAAGAAACTATCACTGGTCGTA
CCAAATTGGGTATTCAAGCATTCGCCGATGCTCTTTTGGTAGTTCCAAAAACTTTGGCTC
AAAACTCTGGTTTCGATCCAATGGATACCATCATTAAATTACAAGAGGAATACGCCAAGG
GTCATATCGTCGGTTTAGATGTTGAATCAGGTGAACCAATGGATCCAGTAAGTGAAGGTA
TTTTCGATCAATATTCTGTATTAAAACAAGTTTATCGTTCTTCACCTGTTATCGCTTCTC
AATTACTCCTCATCGATGAAATTATTAAAGCTGGTAAAGGTATGAGAGGTTCTTCAGTTC
CAGAAGGTCAAGAATAAATATATANNNNNNTTATAATAATAATAATAATAATAAAATAAT
AA
Length of 3' end seq. 652
Connected seq. ID SLE503P
Connected seq. 
>SLE503P.Seq
AACATAAATTAGTTGCAGCAAAATGTAGACAAATTATAGAGTTAAAGAATCATGTTTGTG
ATACACCAGATAAGAATTTCGTTGTTATCAATCAAAAAGGTATTGATCCAATTTGTTTGG
ATATGTTAGCAAAAGCAGGTATAATGGGTTTACGTCGTGCCAAACGTAGAAATATGGAGC
GTTTAACATTGGCATGTGGTGGTACAGCAATGAATTCATTGGAAGATTTAACACCAGATT
GTTTAGGTCATGCAGATTTAGTTTATGAACAAACCTTGGGTGAAGAGAAATATACATTTG
TTGAGGGTGTAAAGAATCCATTCTCTTGTACCGTTTTAATTAAAGGTCCAACCAAGCATC
AAATCGAACAAATTAAAGACGCCCTTCGTGACGGTTTACGTGCCGTTAAGAACACAATCG
AAGATAAATGTGTTGTACCAGGTGGTGGTGCTTTCCAAATCGCCGCTTATGCTGATTTAA
TGAAATTCAAAGAAACTATCACTGGTCGTACCAAATTGGGTATTCAAGCATTCGCCGATG
CTCTTTTGGTAGTTCCAAAAACTTTGGCTCAAAACTCTGGTTTCGATCCAATGGATACCA
TCATTAAATTACAAGAGGAATACGCCAAGGGTCATATCGTCGGTT----------GGAAG
ATTTAACACCAGATTGTTTAGGTCATGCAGATTTAGTTTATGAACAAACCTTGGGTGAAG
AGAAATATACATTTGTTGAGGGTGTAAAGAATCCATTCTCTTGTACCGTTTTAATTAAAG
GTCCAACCAAGCATCAAATCGAACAAATTAAAGACGCCCTTCGTGACGGTTTACGTGCCG
TTAAGAACACAATCGAAGATAAATGTGTTGTACCAGGTGGTGGTGCTTTCCAAATCGCCG
CTTATGCTGATTTAATGAAATTCAAAGAAACTATCACTGGTCGTACCAAATTGGGTATTC
AAGCATTCGCCGATGCTCTTTTGGTAGTTCCAAAAACTTTGGCTCAAAACTCTGGTTTCG
ATCCAATGGATACCATCATTAAATTACAAGAGGAATACGCCAAGGGTCATATCGTCGGTT
TAGATGTTGAATCAGGTGAACCAATGGATCCAGTAAGTGAAGGTATTTTCGATCAATATT
CTGTATTAAAACAAGTTTATCGTTCTTCACCTGTTATCGCTTCTCAATTACTCCTCATCG
ATGAAATTATTAAAGCTGGTAAAGGTATGAGAGGTTCTTCAGTTCCAGAAGGTCAAGAAT
AAATATATANNNNNNTTATAATAATAATAATAATAATAAAATAATAA
Length of connected seq. 1297
Full length Seq ID SLE503E
Full length Seq. 
>SLE503E.Seq
AACATAAATTAGTTGCAGCAAAATGTAGACAAATTATAGAGTTAAAGAATCATGTTTGTG
ATACACCAGATAAGAATTTCGTTGTTATCAATCAAAAAGGTATTGATCCAATTTGTTTGG
ATATGTTAGCAAAAGCAGGTATAATGGGTTTACGTCGTGCCAAACGTAGAAATATGGAGC
GTTTAACATTGGCATGTGGTGGTACAGCAATGAATTCATTGGAAGATTTAACACCAGATT
GTTTAGGTCATGCAGATTTAGTTTATGAACAAACCTTGGGTGAAGAGAAATATACATTTG
TTGAGGGTGTAAAGAATCCATTCTCTTGTACCGTTTTAATTAAAGGTCCAACCAAGCATC
AAATCGAACAAATTAAAGACGCCCTTCGTGACGGTTTACGTGCCGTTAAGAACACAATCG
AAGATAAATGTGTTGTACCAGGTGGTGGTGCTTTCCAAATCGCCGCTTATGCTGATTTAA
TGAAATTCAAAGAAACTATCACTGGTCGTACCAAATTGGGTATTCAAGCATTCGCCGATG
CTCTTTTGGTAGTTCCAAAAACTTTGGCTCAAAACTCTGGTTTCGATCCAATGGATACCA
TCATTAAATTACAAGAGGAATACGCCAAGGGTCATATCGTCGGTTTAGATGTTGAATCAG
GTGAACCAATGGATCCAGTAAGTGAAGGTATTTTCGATCAATATTCTGTATTAAAACAAG
TTTATCGTTCTTCACCTGTTATCGCTTCTCAATTACTCCTCATCGATGAAATTATTAAAG
CTGGTAAAGGTATGAGAGGTTCTTCAGTTCCAGAAGGTCAAGAATAAATATATANNNNNN
TTATAATAATAATAATAATAATAAAATAATAA
Length of full length seq. 872