SLE481
Library SL
(Link to library)
Clone ID SLE481
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14028-1
Original site URL
Representative seq. ID SLE481Z
(Link to Original site)
Representative DNA sequence
>SLE481 (SLE481Q) /CSM/SL/SLE4-D/SLE481Q.Seq.d/
XXXXXXXXXXTAACCAATTTAGCTCATCTATTAGATGGTGAGGAGAAAGAAAAGAGAATA
AAAAGTACATTTTCAAACTATATTAAAGGATCTGGTGATATGTCACAACAACTATTGGCA
TTATTGGGTCAAGAAGTTGGTGAGAATAGTAGATTGATGCAATTGTTGAAAGTTTGTCAT
CAGAAAATCATTCTTCCAAGTTATTATTTCATCAAGGCAAATCTATTTGAAGAATTACCA
TTCAGAGATAAAAGAGGTAGTTGGAGAATGAGAATCACCTTTGAAACTGATGGATCTGTG
ATTGCATCTCATTCAAAACGACAACAATCAACAGCTGGTGCTGAAAATGATCCTGAATTC
GAATTTGAATGGTGTCTCTCCATTATCTTTGATAAAGATATGGTCATTAGTGGTCTAAAG
GTTGAAGTGACCGATTTAATCATTAGTAAAAATATTTCAGACGATAAAAAACAAGAAATT
CAACGTGCTTTCCAAGTTTTACAACAAGCTACAAATAATACAAATAGTAATAATAATTCT
GAACCAATACCATTAAATAAAGTCGATTAAATTAATAAAATAAATTAATAAAATAAATTG
AAAATAAAAATA
sequence update 1998. 5.24
Translated Amino Acid sequence
---TNLAHLLDGEEKEKRIKSTFSNYIKGSGDMSQQLLALLGQEVGENSRLMQLLKVCHQ
KIILPSYYFIKANLFEELPFRDKRGSWRMRITFETDGSVIASHSKRQQSTAGAENDPEFE
FEWCLSIIFDKDMVISGLKVEVTDLIISKNISDDKKQEIQRAFQVLQQATNNTNSNNNSE
PIPLNKVD*inkin**nklkiki


Translated Amino Acid sequence (All Frames)
Frame A:
---nqfsssirw*gerkenkkyifkly*riw*yvtttigiigsrsw*e**idaiveslss
enhsskllfhqgksi*ritiqr*kr*lenenhl*n*wicdcisfktttinswc*k*s*ir
i*mvslhyl**rygh*wskg*sdrfnh**kyfrr*ktrnstcfpsfttsyk*yk****f*
tntik*srln**nklik*ienkn


Frame B:
---TNLAHLLDGEEKEKRIKSTFSNYIKGSGDMSQQLLALLGQEVGENSRLMQLLKVCHQ
KIILPSYYFIKANLFEELPFRDKRGSWRMRITFETDGSVIASHSKRQQSTAGAENDPEFE
FEWCLSIIFDKDMVISGLKVEVTDLIISKNISDDKKQEIQRAFQVLQQATNNTNSNNNSE
PIPLNKVD*inkin**nklkiki


Frame C:
---pi*liy*mvrrkkre*kvhfqtilkdlvichnnywhywvkklvrivd*cnc*kfvir
ksffqviissrqiylknyhseikevvge*esplklmdl*lhliqndnnqqlvlkmilnsn
lngvsplslikiwslvv*rlk*pi*slvkifqtiknkkfnvlskfynklqiiqiviiiln
qyh*iksiklik*inkin*k*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE481 (SLE481Q) /CSM/SL/SLE4-D/SLE481Q.Seq.d/ 1061 0.0
AHD341 (AHD341Q) /CSM/AH/AHD3-B/AHD341Q.Seq.d/ 1055 0.0
SSB670 (SSB670Q) /CSM/SS/SSB6-C/SSB670Q.Seq.d/ 1037 0.0
VFI555 (VFI555Q) /CSM/VF/VFI5-C/VFI555Q.Seq.d/ 1015 0.0
SLE494 (SLE494Q) /CSM/SL/SLE4-D/SLE494Q.Seq.d/ 890 0.0
SLB435 (SLB435Q) /CSM/SL/SLB4-B/SLB435Q.Seq.d/ 575 e-163
SLK858 (SLK858Q) /CSM/SL/SLK8-C/SLK858Q.Seq.d/ 52 1e-05
SFJ263 (SFJ263Q) /CSM/SF/SFJ2-C/SFJ263Q.Seq.d/ 52 1e-05
CHO783 (CHO783Q) /CSM/CH/CHO7-D/CHO783Q.Seq.d/ 52 1e-05
CHK716 (CHK716Q) /CSM/CH/CHK7-A/CHK716Q.Seq.d/ 52 1e-05

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU035009) Dictyostelium discoideum slug cDNA, clone SLE481. 1013 0.0 1
(BJ432431) Dictyostelium discoideum cDNA clone:ddv18m13, 3' ... 1013 0.0 1
(BJ331833) Dictyostelium discoideum cDNA clone:dda37b11, 5' ... 1013 0.0 1
(AU037252) Dictyostelium discoideum slug cDNA, clone SSB670. 989 0.0 1
(AU035015) Dictyostelium discoideum slug cDNA, clone SLE494. 842 0.0 1
(AU033784) Dictyostelium discoideum slug cDNA, clone SLB435. 527 e-145 1
(U82515) Dictyostelium discoideum random slug cDNA5 protein ... 331 2e-86 1
(AC107161) Rattus norvegicus clone CH230-182E7, *** SEQUENCI... 48 0.40 1
(CT142737) Sus scrofa genomic clone CH242-91D14, genomic sur... 48 0.40 1
(AL606652) Oryza sativa genomic DNA, chromosome 4, BAC clone... 36 0.84 2
dna update 2009. 4. 3
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 846,833,304
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.41 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLE481 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE481Z
3' end seq.
>SLE481Z.Seq
----------TAACCAATTTAGCTCATCTATTAGATGGTGAGGAGAAAGAAAAGAGAATA
AAAAGTACATTTTCAAACTATATTAAAGGATCTGGTGATATGTCACAACAACTATTGGCA
TTATTGGGTCAAGAAGTTGGTGAGAATAGTAGATTGATGCAATTGTTGAAAGTTTGTCAT
CAGAAAATCATTCTTCCAAGTTATTATTTCATCAAGGCAAATCTATTTGAAGAATTACCA
TTCAGAGATAAAAGAGGTAGTTGGAGAATGAGAATCACCTTTGAAACTGATGGATCTGTG
ATTGCATCTCATTCAAAACGACAACAATCAACAGCTGGTGCTGAAAATGATCCTGAATTC
GAATTTGAATGGTGTCTCTCCATTATCTTTGATAAAGATATGGTCATTAGTGGTCTAAAG
GTTGAAGTGACCGATTTAATCATTAGTAAAAATATTTCAGACGATAAAAAACAAGAAATT
CAACGTGCTTTCCAAGTTTTACAACAAGCTACAAATAATACAAATAGTAATAATAATTCT
GAACCAATACCATTAAATAAAGTCGATTAAATTAATAAAATAAATTAATAAAATAAATTG
AAAATAAAAATA
Length of 3' end seq. 602
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -