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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE471
Library SL
(Link to library)
Clone ID SLE471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16236-1
Original site URL
Representative seq. ID SLE471E
(Link to Original site)
Representative DNA sequence 
>SLE471 (SLE471Q) /CSM/SL/SLE4-C/SLE471Q.Seq.d/
GTAATGAATACCCAATTAAGGGTTATTTTTATTTTTAAAATAAATGATATATTTTGAAAT
ACATTGGCTCTGTGATGAGTGATTTATTNTTAAATAGTTNACAATTATTCTTCTTCTGGA
GCATCACGGTATGGTGGTGGTGGTGGTGGTGGTGGNAGACCATTCCATGTTACATTGTTA
TTTCCAAAGGAAATACCAGTGGATGATTTGGAGGAAACCTTGGTAGCACTTGATTTACTG
GCACCGAATGAGAGTTTGGTTAAAGCGTCAATTAACATTTTTATTTTTATATTTATTTAT
TTATTTATTTNNNNNNTGGGTTGTTGATAATATTTAAAATTATATTAAAAGATAGAAAGT
ATTTTTACAAATAGAAATAATAGTAGTATTGGTACAAATTGTTGTTGAAGGTGATTTCCA
AGAAGATGATTTCGAAGAAGAATATGCATTTNATTAAATTAAACTTTTTTTCATAAAAAA
ATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTATAATATTACTT
TAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAA
sequence update 1999. 7.16
Translated Amino Acid sequence 
vmntqlrvififkindif*ntlal**viyx*IVXNYSSSGASRYGGGGGGGGRPFHVTLL
FPKEIPVDDLEETLVALDLLAPNESLVKASINIFIFIFIYLFIXXXGC**ylkly*kies
iftnrnnssigtncc*r*fprr*frrricixln*tffhkkiiiii**liiiinnniiill
**qyfflifkdftk
Translated Amino Acid sequence (All Frames) 
Frame A:
vmntqlrvififkindif*ntlal**viyx*IVXNYSSSGASRYGGGGGGGGRPFHVTLL
FPKEIPVDDLEETLVALDLLAPNESLVKASINIFIFIFIYLFIXXXGC**ylkly*kies
iftnrnnssigtncc*r*fprr*frrricixln*tffhkkiiiii**liiiinnniiill
**qyfflifkdftk


Frame B:
**ipn*glflflk*miyfeihwlcde*fixk*xtiilllehhgmvvvvvvvxdhsmlhcy
fqrkyqwmiwrkpw*hliywhrmrvwlkrqltflflylfiylfxxwvvdni*nyikr*kv
flqieiivvlvqivvegdfqeddfeeeyafx*iklffikk****fnn*slssiitl*yyf
nnntff*ysktlqk


Frame C:
neypikgyfyf*nk*yilkyigsvmsdlxlnsxqlfffwsitvwwwwwwwwxtipcyivi
skgntsg*fggnlgst*ftgte*efg*svn*hfyfyiylfiyxxxglliifkiilkdrky
fyk*k***ywyklllkviskkmiskknmhxiklnffs*knnnnnlitnhyhq**hynitl
itilffniqrlykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE471 (SLE471Q) /CSM/SL/SLE4-C/SLE471Q.Seq.d/                        260   2e-68
VSB825 (VSB825Q) /CSM/VS/VSB8-B/VSB825Q.Seq.d/                        248   8e-65
VSI249 (VSI249Q) /CSM/VS/VSI2-C/VSI249Q.Seq.d/                        244   1e-63
VHD416 (VHD416Q) /CSM/VH/VHD4-A/VHD416Q.Seq.d/                        238   8e-62
VSG893 (VSG893Q) /CSM/VS/VSG8-D/VSG893Q.Seq.d/                        214   1e-54
VSE788 (VSE788Q) /CSM/VS/VSE7-D/VSE788Q.Seq.d/                        214   1e-54
SSH687 (SSH687Q) /CSM/SS/SSH6-D/SSH687Q.Seq.d/                        214   1e-54
CHN215 (CHN215Q) /CSM/CH/CHN2-A/CHN215Q.Seq.d/                        214   1e-54
VHP243 (VHP243Q) /CSM/VH/VHP2-B/VHP243Q.Seq.d/                        178   6e-44
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                         96   7e-19
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061502) Dictyostelium discoideum slug cDNA, clone SLE471.      248   0.0    4
(AU035001) Dictyostelium discoideum slug cDNA, clone SLE471.      238   e-164  4
(AU262274) Dictyostelium discoideum vegetative cDNA clone:VS...   248   e-126  2
(BJ438537) Dictyostelium discoideum cDNA clone:ddv37p04, 3' ...   238   e-120  3
(BJ419789) Dictyostelium discoideum cDNA clone:ddv37p04, 5' ...   232   e-111  3
(AU038419) Dictyostelium discoideum slug cDNA, clone SSH687.      214   6e-75  4
(AU268391) Dictyostelium discoideum vegetative cDNA clone:VS...   244   3e-60  1
(AU268390) Dictyostelium discoideum vegetative cDNA clone:VS...   244   3e-60  1
(BJ384077) Dictyostelium discoideum cDNA clone:ddc48m04, 3' ...   214   2e-57  3
(BJ368808) Dictyostelium discoideum cDNA clone:ddc48m04, 5' ...   214   3e-57  3
dna update 2009. 4. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 611,701,812
protein update 2009. 7. 5
PSORT 

 psg: 0.78  gvh: 0.50  alm: 0.25  top: 0.60  tms: 0.07  mit: 0.22  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.23  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLE471 is nuc
5' end seq. ID SLE471F
5' end seq. 
>SLE471F.Seq
GTAATGAATACCCAATTAAGGGTTATTTTTATTTTTAAAATAAATGATATATTTTGAAAT
ACATTGGCTCTGTGATGAGTGATTTATTTTTAAATAGTTTACAATTATTCTTCTTCTGGA
GCATCACGGTATGGTGGTGGTGGTGGTGGTGGTGGGAGACCATTCCATGTTACATTGTTA
TTTCCAAAGGAAATACCAGTGGATGATTTGGAGGAAACCTTGGTAGCACTTGATTTACTG
GCACCGAATGAGAGTTTGGTTAAAGCGTCAATTAACATTTTTATTTTTATATTTATTTAT
TTATTTATTTAAAAAANGGGTTGTTGATAATATTTAAAATTATATTAAAAGATAGAAAGT
ATTTTTACAAATAGAAATAATAGTAGTATTGGTACAAATTGTTGTTGAAGGTGATTTCCA
AGAAGATGATTTCGAAGAAGAATATGCATTTCATTAAATTAAACTTTTTTTCATAAAAAA
ATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTATAATATTACTT
TAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAA----------
Length of 5' end seq. 582
3' end seq. ID SLE471Z
3' end seq. 
>SLE471Z.Seq
----------AAAATAAATGATATATTTTGAAATACATTGGCTCTGTGATGAGTGATTTA
TTGTTAAATAGTTGACAATTATTCTTCTTCTGGAGCATCACGGTATGGTGGTGGTGGTGG
TGGTGGTGGCAGACCATTCCATGTTACATTGTTATTTCCAAAGGAAATACCAGTGGATGA
TTTGGAGGAAACCTTGGTAGCACTTGATTTACTGGCACCGAATGAGAGTTTGGTTAAAGC
GTCAATTAACATTTTTATTTTTATATTTATTTATTTATTTATTTTTTTTTTGGGTTGTTG
ATAATATTTAAAATTATATTAAAAGATAGAAAGTATTTTTACAAATAGAAATAATAGTAG
TATTGGTACAAATTGTTGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATG
CATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAAT
CATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAATATT
CAAAGACTTTACAAAAAA
Length of 3' end seq. 548
Connected seq. ID SLE471P
Connected seq. 
>SLE471P.Seq
GTAATGAATACCCAATTAAGGGTTATTTTTATTTTTAAAATAAATGATATATTTTGAAAT
ACATTGGCTCTGTGATGAGTGATTTATTTTTAAATAGTTTACAATTATTCTTCTTCTGGA
GCATCACGGTATGGTGGTGGTGGTGGTGGTGGTGGGAGACCATTCCATGTTACATTGTTA
TTTCCAAAGGAAATACCAGTGGATGATTTGGAGGAAACCTTGGTAGCACTTGATTTACTG
GCACCGAATGAGAGTTTGGTTAAAGCGTCAATTAACATTTTTATTTTTATATTTATTTAT
TTATTTATTTAAAAAANGGGTTGTTGATAATATTTAAAATTATATTAAAAGATAGAAAGT
ATTTTTACAAATAGAAATAATAGTAGTATTGGTACAAATTGTTGTTGAAGGTGATTTCCA
AGAAGATGATTTCGAAGAAGAATATGCATTTCATTAAATTAAACTTTTTTTCATAAAAAA
ATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTATAATATTACTT
TAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAA----------AAAATAAA
TGATATATTTTGAAATACATTGGCTCTGTGATGAGTGATTTATTGTTAAATAGTTGACAA
TTATTCTTCTTCTGGAGCATCACGGTATGGTGGTGGTGGTGGTGGTGGTGGCAGACCATT
CCATGTTACATTGTTATTTCCAAAGGAAATACCAGTGGATGATTTGGAGGAAACCTTGGT
AGCACTTGATTTACTGGCACCGAATGAGAGTTTGGTTAAAGCGTCAATTAACATTTTTAT
TTTTATATTTATTTATTTATTTATTTTTTTTTTGGGTTGTTGATAATATTTAAAATTATA
TTAAAAGATAGAAAGTATTTTTACAAATAGAAATAATAGTAGTATTGGTACAAATTGTTG
TTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTATTAAATTAAAC
TTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAA
CATTATAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAA
Length of connected seq. 1130
Full length Seq ID SLE471E
Full length Seq. 
>SLE471E.Seq
GTAATGAATACCCAATTAAGGGTTATTTTTATTTTTAAAATAAATGATATATTTTGAAAT
ACATTGGCTCTGTGATGAGTGATTTATTNTTAAATAGTTNACAATTATTCTTCTTCTGGA
GCATCACGGTATGGTGGTGGTGGTGGTGGTGGTGGNAGACCATTCCATGTTACATTGTTA
TTTCCAAAGGAAATACCAGTGGATGATTTGGAGGAAACCTTGGTAGCACTTGATTTACTG
GCACCGAATGAGAGTTTGGTTAAAGCGTCAATTAACATTTTTATTTTTATATTTATTTAT
TTATTTATTTNNNNNNTGGGTTGTTGATAATATTTAAAATTATATTAAAAGATAGAAAGT
ATTTTTACAAATAGAAATAATAGTAGTATTGGTACAAATTGTTGTTGAAGGTGATTTCCA
AGAAGATGATTTCGAAGAAGAATATGCATTTNATTAAATTAAACTTTTTTTCATAAAAAA
ATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTATAATATTACTT
TAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAA
Length of full length seq. 584