NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE460
Library SL
(Link to library)
Clone ID SLE460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15272-1
Original site URL
Representative seq. ID SLE460Z
(Link to Original site)
Representative DNA sequence 
>SLE460 (SLE460Q) /CSM/SL/SLE4-C/SLE460Q.Seq.d/
XXXXXXXXXXATATATTACAACCGTTGAAAAGAGACAAGGCTTTGGTAATGAAAATCTAT
TGGATGAGAGATCTCAATACACTCATTTCACTGCACCAATTAGAAGATATATGGATGTCA
ATATTCATCGTGCTCTCTCACTTCAATTGACTAAAGAGGTGGTTTGGAGTTCTGATATCA
CCATTCAACCCTATTGGGATGAATCAAGTCAAGAATTTACTGATTTTAAAAAATCATTAC
CCACTGGTGATGATTTGACTCAATTGTGTCAAAGATATAACGATATCTCTTGGAAGAGAA
AAATATCTGAAAAGTTAAATCTCCTCTATCTTGCAACCTACATTTGGGAGAAAGGTCCAA
TCTTAACACCTGGTATCGTGGTTACAATGTCTACCAAACATTTGGTTATCTATCTCTCAG
AGTATAATCTCGAAGTGTCAAGCGATAGAAGTGATTTCCTTTCACTCTCTCAACATCACT
CTTCTCCAATCGACGATGATGAAGAAATTGAAATCTCTAAACAATTATCAGTTTTCCTTT
CAGTTGAGCCATTTGTTTTATTTAGAAGTAATTTGGTTCCAAAAATTAAAGTTTCAAAGT
ATCCACCTTTAAACTAAAAAAATCACTA
sequence update 1998. 5.24
Translated Amino Acid sequence 
---YITTVEKRQGFGNENLLDERSQYTHFTAPIRRYMDVNIHRALSLQLTKEVVWSSDIT
IQPYWDESSQEFTDFKKSLPTGDDLTQLCQRYNDISWKRKISEKLNLLYLATYIWEKGPI
LTPGIVVTMSTKHLVIYLSEYNLEVSSDRSDFLSLSQHHSSPIDDDEEIEISKQLSVFLS
VEPFVLFRSNLVPKIKVSKYPPLN*knh
Translated Amino Acid sequence (All Frames) 
Frame A:
---YITTVEKRQGFGNENLLDERSQYTHFTAPIRRYMDVNIHRALSLQLTKEVVWSSDIT
IQPYWDESSQEFTDFKKSLPTGDDLTQLCQRYNDISWKRKISEKLNLLYLATYIWEKGPI
LTPGIVVTMSTKHLVIYLSEYNLEVSSDRSDFLSLSQHHSSPIDDDEEIEISKQLSVFLS
VEPFVLFRSNLVPKIKVSKYPPLN*knh


Frame B:
---ilqplkrdkalvmkiywmrdlntlislhqlediwmsifivlshfn*lkrwfgvlisp
fnpigmnqvknllilknhyplvmi*lncvkditislgrekylks*issilqptfgrkvqs
*hlvswlqclpniwlsisqsiiskcqaievisfhslnitllqstmmkklkslnnyqfsfq
lshlfyleviwfqklkfqsihl*tkkit


Frame C:
---yynr*ketrlw**ksig*eisihsfhctn*kiygcqysscsltsid*rgglef*yhh
stllg*iksriy*f*kiithw**fdsivski*rylleekni*kvksplscnlhlgersnl
ntwyrgynvyqtfgylslrv*srsvkr*k*fpftlstslfsnrr**rn*nl*tiisfpfs
*aicfi*k*fgskn*sfkvstfklkksl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE460 (SLE460Q) /CSM/SL/SLE4-C/SLE460Q.Seq.d/                       1199   0.0
VHH209 (VHH209Q) /CSM/VH/VHH2-A/VHH209Q.Seq.d/                       1183   0.0
AHC772 (AHC772Q) /CSM/AH/AHC7-C/AHC772Q.Seq.d/                       1183   0.0
AHA842 (AHA842Q) /CSM/AH/AHA8-B/AHA842Q.Seq.d/                       1183   0.0
AHA288 (AHA288Q) /CSM/AH/AHA2-D/AHA288Q.Seq.d/                       1183   0.0
VHE506 (VHE506Q) /CSM/VH/VHE5-A/VHE506Q.Seq.d/                       1166   0.0
SLK693 (SLK693Q) /CSM/SL/SLK6-D/SLK693Q.Seq.d/                       1152   0.0
AFG880 (AFG880Q) /CSM/AF/AFG8-D/AFG880Q.Seq.d/                       1112   0.0
SHC518 (SHC518Q) /CSM/SH/SHC5-A/SHC518Q.Seq.d/                       1104   0.0
CFF247 (CFF247Q) /CSM/CF/CFF2-B/CFF247Q.Seq.d/                       1092   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034995) Dictyostelium discoideum slug cDNA, clone SLE460.     1199   0.0    1
(C83998) Dictyostelium discoideum slug cDNA, clone SLK693.       1152   0.0    1
(BJ440870) Dictyostelium discoideum cDNA clone:ddv45a04, 3' ...  1116   0.0    2
(BJ349511) Dictyostelium discoideum cDNA clone:dda36p17, 3' ...  1116   0.0    2
(BJ348132) Dictyostelium discoideum cDNA clone:dda32d12, 3' ...  1116   0.0    2
(BJ348027) Dictyostelium discoideum cDNA clone:dda31o22, 3' ...  1116   0.0    2
(BJ404592) Dictyostelium discoideum cDNA clone:dds29c05, 3' ...  1104   0.0    1
(BJ439337) Dictyostelium discoideum cDNA clone:ddv40k01, 3' ...  1098   0.0    2
(BJ342648) Dictyostelium discoideum cDNA clone:dda14p20, 3' ...  1080   0.0    2
(BJ372136) Dictyostelium discoideum cDNA clone:ddc11m12, 3' ...  1076   0.0    3
dna update 2009. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8TF46) RecName: Full=DIS3-like exonuclease 1;          EC=3.1....    51   2e-05
BC022089_1(BC022089|pid:none) Homo sapiens DIS3 mitotic control ...    51   2e-05
BC126555_1(BC126555|pid:none) Bos taurus DIS3 mitotic control ho...    51   3e-05
(A0JN80) RecName: Full=DIS3-like exonuclease 1;          EC=3.1....    51   3e-05
(Q09568) RecName: Full=Uncharacterized ribonuclease F48E8.6;    ...    50   7e-05
CR940347_726(CR940347|pid:none) Theileria annulata strain Ankara...    48   2e-04
CP000593_78(CP000593|pid:none) Ostreococcus lucimarinus CCE9901 ...    48   3e-04
CP000462_678(CP000462|pid:none) Aeromonas hydrophila subsp. hydr...    47   3e-04
CP001326_20(CP001326|pid:none) Micromonas sp. RCC299 chromosome ...    47   6e-04
CP000644_645(CP000644|pid:none) Aeromonas salmonicida subsp. sal...    46   7e-04
protein update 2009. 6. 3
PSORT 

 psg: 0.62  gvh: 0.54  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLE460 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE460Z
3' end seq. 
>SLE460Z.Seq
----------ATATATTACAACCGTTGAAAAGAGACAAGGCTTTGGTAATGAAAATCTAT
TGGATGAGAGATCTCAATACACTCATTTCACTGCACCAATTAGAAGATATATGGATGTCA
ATATTCATCGTGCTCTCTCACTTCAATTGACTAAAGAGGTGGTTTGGAGTTCTGATATCA
CCATTCAACCCTATTGGGATGAATCAAGTCAAGAATTTACTGATTTTAAAAAATCATTAC
CCACTGGTGATGATTTGACTCAATTGTGTCAAAGATATAACGATATCTCTTGGAAGAGAA
AAATATCTGAAAAGTTAAATCTCCTCTATCTTGCAACCTACATTTGGGAGAAAGGTCCAA
TCTTAACACCTGGTATCGTGGTTACAATGTCTACCAAACATTTGGTTATCTATCTCTCAG
AGTATAATCTCGAAGTGTCAAGCGATAGAAGTGATTTCCTTTCACTCTCTCAACATCACT
CTTCTCCAATCGACGATGATGAAGAAATTGAAATCTCTAAACAATTATCAGTTTTCCTTT
CAGTTGAGCCATTTGTTTTATTTAGAAGTAATTTGGTTCCAAAAATTAAAGTTTCAAAGT
ATCCACCTTTAAACTAAAAAAATCACTA
Length of 3' end seq. 618
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -