NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE450
Library SL
(Link to library)
Clone ID SLE450
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLE450Z
(Link to Original site)
Representative DNA sequence 
>SLE450 (SLE450Q) /CSM/SL/SLE4-C/SLE450Q.Seq.d/
XXXXXXXXXXGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGC
CTTACCACATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGAT
GAAAATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAG
AGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGC
TGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCAT
CGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGA
ATCAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCG
TAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGC
TGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCAT
TGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTC
AACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGT
CCACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAATT
sequence update 1998. 5.24
Translated Amino Acid sequence 
---SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRD
IKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMES
AGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIA
PPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnln
Translated Amino Acid sequence (All Frames) 
Frame A:
---iqvmvsptlyqsmkvmpyhmpsyv*i*lvvillit**ks*lnvvthsppllkeksse
iskkn*ptspstlklkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwn
qlvstkppttps*nvmlisvkiytvmssylvvqlcsqvlliv*tkn*ll*phqp*klksl
lhqnvntlsglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlinmlyfi*t*i


Frame B:
---fr*wclphctnl*rlclttchltfrfsws*sy*lhdenln*twllihhhc*krnrqr
yqrkislrrprl*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygi
swyprnhlqlhhem*c*yp*rfir*crliwwynyvpryc*syeqrincfspinhen*nhc
strt*ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn**iccilfklk


Frame C:
---SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRD
IKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMES
AGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIA
PPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH781 (SLH781Q) /CSM/SL/SLH7-D/SLH781Q.Seq.d/                       1405   0.0
SLE450 (SLE450Q) /CSM/SL/SLE4-C/SLE450Q.Seq.d/                       1405   0.0
SLH788 (SLH788Q) /CSM/SL/SLH7-D/SLH788Q.Seq.d/                       1402   0.0
SLG170 (SLG170Q) /CSM/SL/SLG1-C/SLG170Q.Seq.d/                       1402   0.0
SLE508 (SLE508Q) /CSM/SL/SLE5-A/SLE508Q.Seq.d/                       1402   0.0
SLB156 (SLB156Q) /CSM/SL/SLB1-C/SLB156Q.Seq.d/                       1402   0.0
VFI535 (VFI535Q) /CSM/VF/VFI5-B/VFI535Q.Seq.d/                       1392   0.0
VFG241 (VFG241Q) /CSM/VF/VFG2-B/VFG241Q.Seq.d/                       1392   0.0
VFE485 (VFE485Q) /CSM/VF/VFE4-D/VFE485Q.Seq.d/                       1392   0.0
SLB707 (SLB707Q) /CSM/SL/SLB7-A/SLB707Q.Seq.d/                       1392   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039434) Dictyostelium discoideum slug cDNA, clone SLH781.     1403   0.0    1
(AU034988) Dictyostelium discoideum slug cDNA, clone SLE450.     1403   0.0    1
(AU039680) Dictyostelium discoideum slug cDNA, clone SLG170.     1400   0.0    1
(AU039439) Dictyostelium discoideum slug cDNA, clone SLH788.     1400   0.0    1
(AU035022) Dictyostelium discoideum slug cDNA, clone SLE508.     1400   0.0    1
(AU033549) Dictyostelium discoideum slug cDNA, clone SLB156.     1400   0.0    1
(AU033993) Dictyostelium discoideum slug cDNA, clone SLB707.     1392   0.0    1
(BJ432302) Dictyostelium discoideum cDNA clone:ddv18e09, 3' ...  1390   0.0    1
(BJ431206) Dictyostelium discoideum cDNA clone:ddv13a12, 3' ...  1390   0.0    1
(BJ431101) Dictyostelium discoideum cDNA clone:ddv9j22, 3' e...  1390   0.0    1
dna update 2009. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   445   e-124
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   445   e-124
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        445   e-124
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   441   e-122
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   441   e-122
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   440   e-122
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   438   e-122
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          437   e-121
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   434   e-120
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   433   e-120
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLE450 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE450Z
3' end seq. 
>SLE450Z.Seq
----------GATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGC
CTTACCACATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGAT
GAAAATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAG
AGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGC
TGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCAT
CGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGA
ATCAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCG
TAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGC
TGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCAT
TGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTC
AACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGT
CCACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAATT
Length of 3' end seq. 709
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -