NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE448
Library SL
(Link to library)
Clone ID SLE448
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15567-1
Original site URL
Representative seq. ID SLE448Z
(Link to Original site)
Representative DNA sequence 
>SLE448 (SLE448Q) /CSM/SL/SLE4-B/SLE448Q.Seq.d/
XXXXXXXXXXCCAGAAACCAATCGTGCAGCAATTAAAGAATCCAAATTAATCGCCAATCC
AGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAGCCATTTGTCAATGATTTAGTAAC
ACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTAGTAAACCATCTGAAAA
GAATGATCCAACACGTCTAAGTGATAATATCTTACCTTACAAATTGGTTCAACATACTCA
TGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCACATGTTGGTCA
ATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCAATGACCAAAGA
ACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATTAAAATCGATAA
AGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATACTGTTACAATTGGTGGTTT
TGCTGTCAATGGTAATCATTTAGTTGTCGTAACCACTTTAGATAATTTATTAAAAGGTGC
TGCAACTCAAGCACTTCAAAATATGAATATTTGTTTAGGTTTAGATGAATTAGCAAGTAT
TAAAAATGAATTATAAAAATATTTTTATAATCTAAAAAAAAAAGAAAAT
sequence update 1998. 5.24
Translated Amino Acid sequence 
---ETNRAAIKESKLIANPGCYATGMFLTLKPFVNDLVTPPSCFGISGYSGAGSKPSEKN
DPTRLSDNILPYKLVQHTHELEVSHQLGSPIYFMPHVGQFFQGITLTISMELKYPMTKEQ
VVERYQKFYQNEPLIKIDKDGIPEVKSNSGKHTVTIGGFAVNGNHLVVVTTLDNLLKGAA
TQALQNMNICLGLDELASIKNEL*kyfynlkkken
Translated Amino Acid sequence (All Frames) 
Frame A:
---qkpivqqlknpn*spiqvvmqlvcf*h*shlsmi**hhhlvlvfqvipvlvvnhlkr
miqhv*viisyltnwfnilmnlrlvinwvvqsischmlvnsfkvlplqsqwnsniq*pkn
kwsnviknsikmnr*lksikmvfqrlnqivvnillqlvvllsmvii*ls*pl*iiy*kvl
qlkhfki*ifv*v*mn*qvlkmnyknifii*kkkk


Frame B:
---rnqscsn*riqinrqsrllcnwyvfnieaicq*fsnttilfwyfrlfrcw**ti*ke
*sntsk**yltlqigstys*t*g*ssig*snlfhatcwsilsryypynlngtqisndqrt
sgrtlskilsk*tvn*nr*rwysrg*ik*w*tycynwwfccqw*sfscrnhfr*fikrcc
nsstskyeylfrfr*isky*k*iikifl*skkkrk


Frame C:
---ETNRAAIKESKLIANPGCYATGMFLTLKPFVNDLVTPPSCFGISGYSGAGSKPSEKN
DPTRLSDNILPYKLVQHTHELEVSHQLGSPIYFMPHVGQFFQGITLTISMELKYPMTKEQ
VVERYQKFYQNEPLIKIDKDGIPEVKSNSGKHTVTIGGFAVNGNHLVVVTTLDNLLKGAA
TQALQNMNICLGLDELASIKNEL*kyfynlkkken
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE448 (SLE448Q) /CSM/SL/SLE4-B/SLE448Q.Seq.d/                       1235   0.0
VHJ741 (VHJ741Q) /CSM/VH/VHJ7-B/VHJ741Q.Seq.d/                       1179   0.0
AHE809 (AHE809Q) /CSM/AH/AHE8-A/AHE809Q.Seq.d/                       1179   0.0
AHL333 (AHL333Q) /CSM/AH/AHL3-B/AHL333Q.Seq.d/                       1120   0.0
VSB196 (VSB196Q) /CSM/VS/VSB1-D/VSB196Q.Seq.d/                       1074   0.0
VHJ479 (VHJ479Q) /CSM/VH/VHJ4-D/VHJ479Q.Seq.d/                       1041   0.0
VHI108 (VHI108Q) /CSM/VH/VHI1-A/VHI108Q.Seq.d/                       1039   0.0
SSH168 (SSH168Q) /CSM/SS/SSH1-C/SSH168Q.Seq.d/                       1037   0.0
AHB227 (AHB227Q) /CSM/AH/AHB2-B/AHB227Q.Seq.d/                       1025   0.0
SHK272 (SHK272Q) /CSM/SH/SHK2-C/SHK272Q.Seq.d/                       1021   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034986) Dictyostelium discoideum slug cDNA, clone SLE448.     1235   0.0    1
(BJ442554) Dictyostelium discoideum cDNA clone:ddv50b11, 3' ...  1140   0.0    3
(BJ350480) Dictyostelium discoideum cDNA clone:dda40b04, 3' ...  1140   0.0    3
(BJ354321) Dictyostelium discoideum cDNA clone:dda53b09, 3' ...  1057   0.0    3
(AU261885) Dictyostelium discoideum vegetative cDNA clone:VS...  1074   0.0    1
(BJ442457) Dictyostelium discoideum cDNA clone:ddv49n20, 3' ...  1041   0.0    1
(BJ441589) Dictyostelium discoideum cDNA clone:ddv47o01, 3' ...  1039   0.0    1
(AU038021) Dictyostelium discoideum slug cDNA, clone SSH168.      718   0.0    2
(BJ348455) Dictyostelium discoideum cDNA clone:dda33e08, 3' ...   904   0.0    2
(BJ408103) Dictyostelium discoideum cDNA clone:dds44o18, 3' ...  1015   0.0    1
dna update 2009. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   221   1e-56
AM039952_2545(AM039952|pid:none) Xanthomonas campestris pv. vesi...   219   7e-56
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...   218   9e-56
AP008229_2516(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M...   218   9e-56
AM920689_1961(AM920689|pid:none) Xanthomonas campestris pv. camp...   213   5e-54
AM743169_3114(AM743169|pid:none) Stenotrophomonas maltophilia K2...   211   2e-53
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   209   7e-53
CP001111_2719(CP001111|pid:none) Stenotrophomonas maltophilia R5...   208   9e-53
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete...   202   5e-51
(Q01217) RecName: Full=Protein ARG5,6, mitochondrial; Contains: ...   193   4e-48
protein update 2009. 6. 3
PSORT 

 psg: 0.94  gvh: 0.58  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal

>> prediction for SLE448 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE448Z
3' end seq. 
>SLE448Z.Seq
----------CCAGAAACCAATCGTGCAGCAATTAAAGAATCCAAATTAATCGCCAATCC
AGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAGCCATTTGTCAATGATTTAGTAAC
ACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTAGTAAACCATCTGAAAA
GAATGATCCAACACGTCTAAGTGATAATATCTTACCTTACAAATTGGTTCAACATACTCA
TGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCACATGTTGGTCA
ATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCAATGACCAAAGA
ACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATTAAAATCGATAA
AGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATACTGTTACAATTGGTGGTTT
TGCTGTCAATGGTAATCATTTAGTTGTCGTAACCACTTTAGATAATTTATTAAAAGGTGC
TGCAACTCAAGCACTTCAAAATATGAATATTTGTTTAGGTTTAGATGAATTAGCAAGTAT
TAAAAATGAATTATAAAAATATTTTTATAATCTAAAAAAAAAAGAAAAT
Length of 3' end seq. 639
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -