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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE439
Library SL
(Link to library)
Clone ID SLE439
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16366-1
Original site URL
Representative seq. ID SLE439E
(Link to Original site)
Representative DNA sequence 
>SLE439 (SLE439Q) /CSM/SL/SLE4-B/SLE439Q.Seq.d/
GAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGT
CATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGT
GGTGGTCCACAACAAGCACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAAAAC
TAAAAATATCCAAAAATATCAAAATACCCAAAAATCTAAAATT
sequence update 1998. 5.24
Translated Amino Acid sequence 
NKVLMVVLVVLINNMVVLMVIKNNNNKVLILLILVLNLVVVVHNKHNSVNNNKQFKKKKT
KNIQKYQNTQKSKI
Translated Amino Acid sequence (All Frames) 
Frame A:
eqsshggaggayqqhggayghqkqqqqgfnpadfgaqfggggpqqaqqcqqq*ti*kkkn
*kypkiskypki*n


Frame B:
NKVLMVVLVVLINNMVVLMVIKNNNNKVLILLILVLNLVVVVHNKHNSVNNNKQFKKKKT
KNIQKYQNTQKSKI


Frame C:
tkfswwcwwclsttwwclwsskttttrf*sc*fwcsiwwwwsttsttvsttinnlkkkkl
kisknikipknlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK150 (VSK150Q) /CSM/VS/VSK1-C/VSK150Q.Seq.d/                        327   4e-89
SLK513 (SLK513Q) /CSM/SL/SLK5-A/SLK513Q.Seq.d/                        327   4e-89
SLJ808 (SLJ808Q) /CSM/SL/SLJ8-A/SLJ808Q.Seq.d/                        327   4e-89
SLJ243 (SLJ243Q) /CSM/SL/SLJ2-B/SLJ243Q.Seq.d/                        327   4e-89
SLJ110 (SLJ110Q) /CSM/SL/SLJ1-A/SLJ110Q.Seq.d/                        327   4e-89
SLI420 (SLI420Q) /CSM/SL/SLI4-A/SLI420Q.Seq.d/                        327   4e-89
SLI160 (SLI160Q) /CSM/SL/SLI1-C/SLI160Q.Seq.d/                        327   4e-89
SLH286 (SLH286Q) /CSM/SL/SLH2-D/SLH286Q.Seq.d/                        327   4e-89
SLG441 (SLG441Q) /CSM/SL/SLG4-B/SLG441Q.Seq.d/                        327   4e-89
SLF639 (SLF639Q) /CSM/SL/SLF6-B/SLF639Q.Seq.d/                        327   4e-89
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270718) Dictyostelium discoideum vegetative cDNA clone:VS...   329   2e-86  1
(AU054053) Dictyostelium discoideum slug cDNA, clone SLK513.      329   2e-86  1
(AU053854) Dictyostelium discoideum slug cDNA, clone SLJ808.      329   2e-86  1
(AU053619) Dictyostelium discoideum slug cDNA, clone SLJ243.      329   2e-86  1
(AU053559) Dictyostelium discoideum slug cDNA, clone SLJ110.      329   2e-86  1
(AU053338) Dictyostelium discoideum slug cDNA, clone SLI420.      329   2e-86  1
(AU053216) Dictyostelium discoideum slug cDNA, clone SLI160.      329   2e-86  1
(AU053080) Dictyostelium discoideum slug cDNA, clone SLF639.      329   2e-86  1
(AU053078) Dictyostelium discoideum slug cDNA, clone SLF637.      329   2e-86  1
(AU053064) Dictyostelium discoideum slug cDNA, clone SLF609.      329   2e-86  1
dna update 2009. 4. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.313    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 33,241,567
protein update 2009. 7. 5
PSORT 

 psg: 0.99  gvh: 0.55  alm: 0.16  top: 0.53  tms: 0.13  mit: 0.42  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for SLE439 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE439E
Full length Seq. 
>SLE439E.Seq
GAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGTGCTTATGGT
CATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAATTTGGTGGT
GGTGGTCCACAACAAGCACAACAGTGTCAACAACAATAAACAATTTAAAAAAAAAAAAAC
TAAAAATATCCAAAAATATCAAAATACCCAAAAATCTAAAATT
Length of full length seq. 223