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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE437
Library SL
(Link to library)
Clone ID SLE437
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLE437F
(Link to Original site)
Representative DNA sequence 
>SLE437 (SLE437Q) /CSM/SL/SLE4-B/SLE437Q.Seq.d/
GTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAG
AAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAG
AATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTA
AATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACAT
ACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCT
CCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGG
AAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACAT
TAAAAAAXXXXXXXXXX
sequence update 1999. 1.21
Translated Amino Acid sequence 
vfkkfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQL
NSNFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAW
KFYEGKKYKENEQKLIKQKH*k---
Translated Amino Acid sequence (All Frames) 
Frame A:
vfkkfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQL
NSNFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAW
KFYEGKKYKENEQKLIKQKH*k---


Frame B:
flknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*mhqkin*
iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwvylvyllg
nsmkerntkrmnkn*lnknik---


Frame C:
f*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnkcikrsik
fkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficle
il*rkeiqre*tkin*tktlk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        678   0.0
SSM690 (SSM690Q) /CSM/SS/SSM6-D/SSM690Q.Seq.d/                        678   0.0
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        678   0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        678   0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        678   0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        678   0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        678   0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        678   0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        678   0.0
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/                        678   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061491) Dictyostelium discoideum slug cDNA, clone SLE437.      535   e-148  1
(AU051971) Dictyostelium discoideum slug cDNA, clone SSC830.      535   e-148  1
(AU038276) Dictyostelium discoideum slug cDNA, clone SSH508.      535   e-148  1
(AU037814) Dictyostelium discoideum slug cDNA, clone SSE328.      535   e-148  1
(C94316) Dictyostelium discoideum slug cDNA, clone SSK829.        535   e-148  1
(C93202) Dictyostelium discoideum slug cDNA, clone SSM768.        535   e-148  1
(C92894) Dictyostelium discoideum slug cDNA, clone SSF657.        535   e-148  1
(C92783) Dictyostelium discoideum slug cDNA, clone SSF340.        535   e-148  1
(C92574) Dictyostelium discoideum slug cDNA, clone SSE782.        535   e-148  1
(C92404) Dictyostelium discoideum slug cDNA, clone SSE771.        535   e-148  1
dna update 2009. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A...    37   0.21
AE014188_347(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.27
AL844505_83(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.27
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   0.61
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.61
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   0.61
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   0.80
CP000742_1292(CP000742|pid:none) Methanococcus vannielii SB, com...    34   1.4
AE015929_1414(AE015929|pid:none) Staphylococcus epidermidis ATCC...    33   3.0
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle...    33   3.0
protein update 2009. 6. 3
PSORT 

 psg: 0.58  gvh: 0.40  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SLE437 is mit
5' end seq. ID SLE437F
5' end seq. 
>SLE437F.Seq
GTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAG
AAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAG
AATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTA
AATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACAT
ACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCT
CCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGG
AAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACAT
TAAAAAA----------
Length of 5' end seq. 427
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -