SLE425
Library SL
(Link to library)
Clone ID SLE425
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15692-1
Original site URL
Representative seq. ID SLE425F
(Link to Original site)
Representative DNA sequence
>SLE425 (SLE425Q) /CSM/SL/SLE4-B/SLE425Q.Seq.d/
AAGTGATATGCCAAATGAAGAGAAAATTAAATTTGTTGAAAACATTATTGAAACTTTAAA
TTTATTAAAGATTCAAAATAAACAAATTGGTCATGGTGAAGAAGGTCTTTCATTATCACA
ACGTAAACGTGTTAACATTGGTGTTGAATTAGCATCAGATCCACAATTGCTCTTCCTTGA
TGAACCAACCTCTGGTTTAGATTCATCTGCTGCCTTGAAGGTAATGAATTTAATTAAAAA
GATTGCATCAAGTGGTCGTTCAATTATTTGTACAATTCATCAACCATCAACTTCAATTTT
CAAACAATTTGATCATCTTTTACTCTTAAAGAGAGGTGGTGAAACTGTTTACTTTGGTCC
AACTGGTGATAAGAGTGCTGATTTACTTGGTTATTTTGAAAATCATGGTTTAATTTGTGA
TCCATTAAAGAATCCAGCCGATTTCATTTTAGATGTAACCGATGATGTCATTGAAACCAC
ACTCGATGGTAAACCACATCAATTCCATCCAGTTCAACAATACAAAGAATCACAATTGAA
TAGTGATCTTTTGGCCAAAATTGATGCTGGTGTTATGCCAGTTGGTACACCAGTACCAGA
ATTCCATGGTGTTTATTCCTCATCCTATCAAACTCAATTCGTTGAATTGGGTAAACGTTC
TTGGTTAGCACAAGTACGTAGAGTTCAAXXXXXXXXXX
sequence update 1999. 1.21
Translated Amino Acid sequence
SDMPNEEKIKFVENIIETLNLLKIQNKQIGHGEEGLSLSQRKRVNIGVELASDPQLLFLD
EPTSGLDSSAALKVMNLIKKIASSGRSIICTIHQPSTSIFKQFDHLLLLKRGGETVYFGP
TGDKSADLLGYFENHGLICDPLKNPADFILDVTDDVIETTLDGKPHQFHPVQQYKESQLN
SDLLAKIDAGVMPVGTPVPEFHGVYSSSYQTQFVELGKRSWLAQVRRV---


Translated Amino Acid sequence (All Frames)
Frame A:
k*yak*ren*ic*khy*nfkfikdsk*tnwsw*rrsfiitt*tc*hwc*isirstialp*
*tnlwfrficclegnefn*kdcikwsfnylynsstinfnfqti*ssftlkerw*ncllws
nw**ec*ftwlf*kswfnl*sikessrfhfrcnr*ch*nhtrw*ttsipssstiqritie
**sfgqn*cwcyaswytstripwclflilsnsir*ig*tflvstst*ss---


Frame B:
SDMPNEEKIKFVENIIETLNLLKIQNKQIGHGEEGLSLSQRKRVNIGVELASDPQLLFLD
EPTSGLDSSAALKVMNLIKKIASSGRSIICTIHQPSTSIFKQFDHLLLLKRGGETVYFGP
TGDKSADLLGYFENHGLICDPLKNPADFILDVTDDVIETTLDGKPHQFHPVQQYKESQLN
SDLLAKIDAGVMPVGTPVPEFHGVYSSSYQTQFVELGKRSWLAQVRRV---


Frame C:
vicqmkrklnllktllkl*iy*rfkinklvmvkkvfhyhnvnvltlvln*hqihncsslm
nqplv*ihllp*r**i*lkrlhqvvvqlfvqfinhqlqfsnnliifys*revvklftlvq
lvirvliylvilkimv*fvih*riqpisf*m*pmmslkphsmvnhinsiqfnntknhn*i
vifwpklmlvlcqlvhqyqnsmvfiphpiklnslnwvnvlg*hkyvef---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE425 (SLE425Q) /CSM/SL/SLE4-B/SLE425Q.Seq.d/ 1364 0.0
SFD579 (SFD579Q) /CSM/SF/SFD5-D/SFD579Q.Seq.d/ 1066 0.0
AFN520 (AFN520Q) /CSM/AF/AFN5-A/AFN520Q.Seq.d/ 872 0.0
SSM755 (SSM755Q) /CSM/SS/SSM7-C/SSM755Q.Seq.d/ 852 0.0
SLC570 (SLC570Q) /CSM/SL/SLC5-C/SLC570Q.Seq.d/ 726 0.0
SFF455 (SFF455Q) /CSM/SF/SFF4-C/SFF455Q.Seq.d/ 702 0.0
AFD695 (AFD695Q) /CSM/AF/AFD6-D/AFD695Q.Seq.d/ 585 e-166
SFG544 (SFG544Q) /CSM/SF/SFG5-B/SFG544Q.Seq.d/ 573 e-162
AFC739 (AFC739Q) /CSM/AF/AFC7-B/AFC739Q.Seq.d/ 511 e-144
AFC887 (AFC887Q) /CSM/AF/AFC8-D/AFC887Q.Seq.d/ 58 2e-07

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AF482381) Dictyostelium discoideum ABC transporter AbcG2 (a... 1193 0.0 1
(AF246689) Dictyostelium discoideum ABC transporter mdrA1 (M... 1193 0.0 1
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 1193 0.0 1
(AU061488) Dictyostelium discoideum slug cDNA, clone SLE425. 1193 0.0 1
(BJ388307) Dictyostelium discoideum cDNA clone:dds8m19, 5' e... 1066 0.0 1
(BJ328413) Dictyostelium discoideum cDNA clone:dda28g05, 5' ... 872 0.0 1
(AU061001) Dictyostelium discoideum slug cDNA, clone SLC570. 726 0.0 1
(BJ386973) Dictyostelium discoideum cDNA clone:dds11n14, 5' ... 563 0.0 2
(BJ390939) Dictyostelium discoideum cDNA clone:dds14g11, 5' ... 573 e-159 1
(BJ324966) Dictyostelium discoideum cDNA clone:dda8m24, 5' e... 414 e-116 2
dna update 2009. 4. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54TV2) RecName: Full=ABC transporter G family member 5; AltNam... 189 5e-47
(Q54TV1) RecName: Full=ABC transporter G family member 6; AltNam... 187 2e-46
AF482384_1(AF482384|pid:none) Dictyostelium discoideum ABC trans... 187 3e-46
AP007150_4(AP007150|pid:none) Aspergillus oryzae RIB40 genomic D... 171 1e-41
AM849042_1(AM849042|pid:none) Candida glabrata snq2 gene for ABC... 162 7e-39
AB028872_1(AB028872|pid:none) Botryotinia fuckeliana gene for BM... 162 1e-38
AM270335_3(AM270335|pid:none) Aspergillus niger contig An15c0080... 161 2e-38
AF482395_1(AF482395|pid:none) Dictyostelium discoideum ABC trans... 161 2e-38
AM270318_7(AM270318|pid:none) Aspergillus niger contig An14c0110... 159 8e-38
AB091179_1(AB091179|pid:none) Botryotinia fuckeliana BMR5 gene f... 158 1e-37
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.33 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: plasma membrane

>> prediction for SLE425 is cyt

5' end seq. ID SLE425F
5' end seq.
>SLE425F.Seq
AAGTGATATGCCAAATGAAGAGAAAATTAAATTTGTTGAAAACATTATTGAAACTTTAAA
TTTATTAAAGATTCAAAATAAACAAATTGGTCATGGTGAAGAAGGTCTTTCATTATCACA
ACGTAAACGTGTTAACATTGGTGTTGAATTAGCATCAGATCCACAATTGCTCTTCCTTGA
TGAACCAACCTCTGGTTTAGATTCATCTGCTGCCTTGAAGGTAATGAATTTAATTAAAAA
GATTGCATCAAGTGGTCGTTCAATTATTTGTACAATTCATCAACCATCAACTTCAATTTT
CAAACAATTTGATCATCTTTTACTCTTAAAGAGAGGTGGTGAAACTGTTTACTTTGGTCC
AACTGGTGATAAGAGTGCTGATTTACTTGGTTATTTTGAAAATCATGGTTTAATTTGTGA
TCCATTAAAGAATCCAGCCGATTTCATTTTAGATGTAACCGATGATGTCATTGAAACCAC
ACTCGATGGTAAACCACATCAATTCCATCCAGTTCAACAATACAAAGAATCACAATTGAA
TAGTGATCTTTTGGCCAAAATTGATGCTGGTGTTATGCCAGTTGGTACACCAGTACCAGA
ATTCCATGGTGTTTATTCCTCATCCTATCAAACTCAATTCGTTGAATTGGGTAAACGTTC
TTGGTTAGCACAAGTACGTAGAGTTCAA----------
Length of 5' end seq. 688
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -