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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE419
Library SL
(Link to library)
Clone ID SLE419
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID SLE419Z
(Link to Original site)
Representative DNA sequence 
>SLE419 (SLE419Q) /CSM/SL/SLE4-A/SLE419Q.Seq.d/
XXXXXXXXXXGGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTA
TCTTAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTG
CAACTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTG
TAATCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCC
GTGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATT
TCCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACA
TTCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAA
TCAATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAG
CAACTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCAC
AAGAAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTT
AAATAATGTATAATAATTAGTTTTAATAATTTTATGCAACATAATAATATAT
sequence update 1998. 5.24
Translated Amino Acid sequence 
---AIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLV
IFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYI
PMDFIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQ
ETHHKSVVTDNKV*nnnni*imynn*f**fyat**y
Translated Amino Acid sequence (All Frames) 
Frame A:
---AIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLV
IFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYI
PMDFIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQ
ETHHKSVVTDNKV*nnnni*imynn*f**fyat**y


Frame B:
---qsfmmvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*
sllslclklllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtf
qwisln*vspifsvvrlnqsikmhsvksmvglvkksqrkqlkslikllnnklkemlymhk
kpiinlllpiikfkitiifk*ciiisfnnfmqhnni


Frame C:
---nhs*wylvp*cyqssylnr**tswshlssslylwscnyfrit*srflll*tsr*scn
lcfryvsnccylywclwfpwlst*flfr*srlsstwykfprlwlglgclcldlvfplvhs
ngfh*irchlyspw*d*tnq*rctp*nlwlvw*rnpkgsnssls*sc*tts*krcftctr
nps*iccyr**slk*q*ylnnv**lvliilcniiiy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE419 (SLE419Q) /CSM/SL/SLE4-A/SLE419Q.Seq.d/                       1128   0.0
VSE676 (VSE676Q) /CSM/VS/VSE6-D/VSE676Q.Seq.d/                       1126   0.0
VSB710 (VSB710Q) /CSM/VS/VSB7-A/VSB710Q.Seq.d/                       1126   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1126   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1126   0.0
VHN486 (VHN486Q) /CSM/VH/VHN4-D/VHN486Q.Seq.d/                       1126   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1126   0.0
VHK831 (VHK831Q) /CSM/VH/VHK8-B/VHK831Q.Seq.d/                       1126   0.0
VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1126   0.0
VHK489 (VHK489Q) /CSM/VH/VHK4-D/VHK489Q.Seq.d/                       1126   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X98286) D.discoideum mRNA for P-type ATPase.                    1106   0.0    1
(AU263289) Dictyostelium discoideum vegetative cDNA clone:VS...  1106   0.0    1
(AU262191) Dictyostelium discoideum vegetative cDNA clone:VS...  1106   0.0    1
(AU039227) Dictyostelium discoideum slug cDNA, clone SLH207.     1106   0.0    1
(AU034967) Dictyostelium discoideum slug cDNA, clone SLE419.     1106   0.0    1
(AU034189) Dictyostelium discoideum slug cDNA, clone SLC237.     1106   0.0    1
(BJ446236) Dictyostelium discoideum cDNA clone:ddv62h03, 3' ...  1106   0.0    1
(BJ445486) Dictyostelium discoideum cDNA clone:ddv59i14, 3' ...  1106   0.0    1
(BJ445104) Dictyostelium discoideum cDNA clone:ddv58o10, 3' ...  1106   0.0    1
(BJ444931) Dictyostelium discoideum cDNA clone:ddv57l22, 3' ...  1106   0.0    1
dna update 2009. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   404   e-111
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   404   e-111
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   108   1e-22
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   105   1e-21
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   104   2e-21
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   103   3e-21
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   103   3e-21
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   101   2e-20
T12577(T12577) H+-exporting ATPase (EC 3.6.3.6) - common ice pla...   100   3e-20
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   100   3e-20
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.61  alm: 0.25  top: 0.37  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: extracellular, including cell wall

>> prediction for SLE419 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE419Z
3' end seq. 
>SLE419Z.Seq
----------GGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTA
TCTTAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTG
CAACTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTG
TAATCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCC
GTGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATT
TCCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACA
TTCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAA
TCAATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAG
CAACTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCAC
AAGAAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTTAAAATAACAATAATATTT
AAATAATGTATAATAATTAGTTTTAATAATTTTATGCAACATAATAATATAT
Length of 3' end seq. 642
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -