SLE412
Library SL
(Link to library)
Clone ID SLE412
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1
Original site URL
Representative seq. ID SLE412Z
(Link to Original site)
Representative DNA sequence
>SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/
XXXXXXXXXXAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACAT
TGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAAT
GTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGG
TAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCC
AATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGA
AGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGT
TAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACA
AGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGT
TTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGA
TTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCT
TTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAA
TTTTAAAACAATAAAAATTTACATATTAAAATTTAAAAAAAAA
sequence update 1998. 5.24
Translated Amino Acid sequence
---CGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGK
TTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVK
GNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*ids
tpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktikiyilkfkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---nvvlvtlpirslltstllvtlkwpqlqlsmqtlml*cqsppqpkpqslnhqprlstv
rpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpqkpiklklplvlysnssqpqll
kvmspqlavspqalllllnklpvlllllpkkllwllplkfgql*ihhvtvnvd*rdykli
qlllsndnklk*ynsflfffiltnvfvn*linflntpfsilkq*kfty*nlkk


Frame B:
---mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cfnvnhhlnpnlnlsiinqdcqr*
dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclrsqss*nclwyciqihlspsc*
r*clls*lshlkhccccstscrccccccpkscygccl*slvnckftm*l*mwieeiin*f
nssspmtin*nntthsyfslf*pmylsinlltf*thpfqf*nnknlhiki*kk


Frame C:
---CGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQTSISQSSTKTVNGK
TTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASGTVFKFISAPVVK
GNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCNCECGLKRL*ids
tpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktikiyilkfkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/ 773 0.0
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/ 773 0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/ 773 0.0
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/ 773 0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/ 773 0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/ 773 0.0
SHL325 (SHL325Q) /CSM/SH/SHL3-B/SHL325Q.Seq.d/ 773 0.0
SHL307 (SHL307Q) /CSM/SH/SHL3-A/SHL307Q.Seq.d/ 773 0.0
SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/ 773 0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/ 773 0.0

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ409547) Dictyostelium discoideum cDNA clone:dds42a16, 3' ... 361 0.0 3
(AU034962) Dictyostelium discoideum slug cDNA, clone SLE412. 361 0.0 3
(AU039318) Dictyostelium discoideum slug cDNA, clone SLH545. 361 0.0 3
(BJ407121) Dictyostelium discoideum cDNA clone:dds37e13, 3' ... 361 0.0 3
(BJ403162) Dictyostelium discoideum cDNA clone:dds24c08, 3' ... 361 0.0 3
(BJ408565) Dictyostelium discoideum cDNA clone:dds46b07, 3' ... 361 0.0 3
(BJ400337) Dictyostelium discoideum cDNA clone:dds9e24, 3' e... 361 0.0 3
(AU033540) Dictyostelium discoideum slug cDNA, clone SLB147. 361 0.0 3
(BJ408085) Dictyostelium discoideum cDNA clone:dds44l15, 3' ... 361 0.0 3
(BJ408240) Dictyostelium discoideum cDNA clone:dds45m03, 3' ... 361 0.0 3
dna update 2009. 4. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p... 229 8e-59
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR... 34 4.8
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF... 33 6.3

protein update 2009. 1.23
PSORT

psg: 0.81 gvh: 0.54 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLE412 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE412Z
3' end seq.
>SLE412Z.Seq
----------AAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACAT
TGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAAT
GTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGG
TAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCC
AATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGA
AGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGT
TAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACA
AGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGT
TTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGA
TTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCT
TTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAA
TTTTAAAACAATAAAAATTTACATATTAAAATTTAAAAAAAAA
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -